ggKbase home page

SCNpilot_cont_300_bf_scaffold_751_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_751_curated_1
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2..877)
DNA (876bp) protein (292aa)
Pyrrolo-quinoline quinone n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QGS3_SPILD
pyrrolo-quinoline quinone
Pyrrolo-quinoline quinone {ECO:0000313|EMBL:ADB41095.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_751_curated_2
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1129..1752)
DNA (624bp) protein (208aa)
Transcriptional regulatory protein liaR n=1 Tax=Fibrella aestuarina BUZ 2 RepID=I0KBG1_9BACT
Transcriptional regulatory protein liaR
Transcriptional regulatory protein liaR {ECO:0000313|EMBL:CCH01464.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_751_curated_3
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1841..2923)
DNA (1083bp) protein (361aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCH01463.1}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCH01463.1};; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037E9C2A
SCNpilot_cont_300_bf_scaffold_751_curated_4
unknown

Not on your lists

comp(2929..3627)
DNA (699bp) protein (233aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_751_curated_5
unknown

Not on your lists

comp(3658..4071)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_751_curated_6
unknown

Not on your lists

4139..5665
DNA (1527bp) protein (509aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_751_curated_7
unknown

Not on your lists

comp(6469..6639)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_751_curated_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6954..9779)
DNA (2826bp) protein (942aa)
TonB-denpendent receptor n=1 Tax=Spirosoma panaciterrae RepID=UPI0003607998
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADB38886.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_751_curated_9
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10186..11646
DNA (1461bp) protein (487aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037E7521
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38885.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_751_curated_10
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11686..12369
DNA (684bp) protein (228aa)
glycosyl transferase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037CC236
Glycosyl transferase {ECO:0000313|EMBL:AKD56032.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
family 2 glycosyl transferase
SCNpilot_cont_300_bf_scaffold_751_curated_11
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12445..13368)
DNA (924bp) protein (308aa)
pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
RNA pseudouridylate synthase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037152C7
SCNpilot_cont_300_bf_scaffold_751_curated_12
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13783..14553)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C9C12
LytTR family transcriptional regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ADB42381.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_751_curated_13
unknown

Not on your lists

15005..15412
DNA (408bp) protein (136aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_751_curated_14
Flavobacterium sp. 316, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16103..17092
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000376D3BD
Uncharacterized protein {ECO:0000313|EMBL:KIX19838.1}; TaxID=1603293 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. 316.;"
lyttr DNA-binding region
SCNpilot_cont_300_bf_scaffold_751_curated_15
unknown

Not on your lists

18027..18125
DNA (99bp) protein (33aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_751_curated_16
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19257..19973
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Rudanella lutea RepID=UPI0003818F64
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51422.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_751_curated_17
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20207..21067
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2KAV8_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL70318.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
YadA-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_751_curated_18
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21239..22567
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQE1_RUNSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51421.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_751_curated_19
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22780..24336
DNA (1557bp) protein (519aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036D3B34
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEE49715.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_cont_300_bf_scaffold_751_curated_20
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24394..25530
DNA (1137bp) protein (379aa)
hypothetical protein, partial n=1 Tax=Spirosoma panaciterrae RepID=UPI0003713AA0
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:AEI51419.1}; Flags: Precursor;; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
Displaying 20 items

View Taxonomy