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SCNpilot_cont_300_bf_scaffold_232_curated

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_232_curated_1
unknown

Not on your lists

comp(108..536)
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_232_curated_2
Leptospira weilii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(1717..2280)
DNA (564bp) protein (188aa)
Uncharacterized protein n=3 Tax=Leptospira weilii RepID=K8KLY3_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:EMN90149.1}; TaxID=1088542 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira weilii str. UI 13098.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_232_curated_3
unknown

Not on your lists

2471..2644
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_232_curated_4
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2615..3247)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2SLG1_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KFF05049.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
SCNpilot_cont_300_bf_scaffold_232_curated_5
Pontibacter sp. BAB1700, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3717..4388)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Pontibacter sp. BAB1700 RepID=J1FF77_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EJF08894.1}; TaxID=1144253 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter sp. BAB1700.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_232_curated_6
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4855..5661)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037AD4BB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI51367.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_232_curated_7
Myroides profundi, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6850..7452)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Myroides injenensis RepID=UPI00028A372D
Uncharacterized protein {ECO:0000313|EMBL:AJH14935.1}; TaxID=480520 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides profundi.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_232_curated_8
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7833..10043)
DNA (2211bp) protein (737aa)
penicillin amidase n=1 Tax=Spirosoma panaciterrae RepID=UPI000375D4E8
peptidase S45 penicillin amidase
Peptidase S45 penicillin amidase {ECO:0000313|EMBL:ADB40449.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_9
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10401..11081
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036AEF20
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB40453.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_10
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11666..12298)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Indibacter alkaliphilus LW1 RepID=S2DUY0_9BACT
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIC92021.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_232_curated_11
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12391..13545)
DNA (1155bp) protein (385aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037A437D
Histidine kinase {ECO:0000313|EMBL:AHM60318.1}; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
histidine kinase
SCNpilot_cont_300_bf_scaffold_232_curated_12
unknown

Not on your lists

comp(13487..14131)
DNA (645bp) protein (215aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_232_curated_13
unknown

Not on your lists

comp(14248..15174)
DNA (927bp) protein (309aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_232_curated_14
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15829..16434)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003709627
Uncharacterized protein {ECO:0000313|EMBL:AKD55296.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
MarR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_232_curated_15
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16529..16894
DNA (366bp) protein (122aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037E7C5D
Uncharacterized protein {ECO:0000313|EMBL:AKD55297.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_232_curated_16
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16974..17756)
DNA (783bp) protein (261aa)
Transposase family protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AQ90_FLELS
transposase family protein
Transposase family protein {ECO:0000313|EMBL:AFM06125.1}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 /; NCIMB 1366 / Sio-4).;"
SCNpilot_cont_300_bf_scaffold_232_curated_17
Flexibacter litoralis, Flexibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17698..18102)
DNA (405bp) protein (135aa)
Transposase family protein n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AGX3_FLELS
transposase family protein
Transposase family protein {ECO:0000313|EMBL:AFM03208.1}; TaxID=880071 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Flexibacter.;" source="Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 /; NCIMB 1366 / Sio-4).;"
SCNpilot_cont_300_bf_scaffold_232_curated_18
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

18610..21177
DNA (2568bp) protein (856aa)
TonB-dependent receptor n=1 Tax=Spirosoma panaciterrae RepID=UPI00036E0D55
TonB-dependent receptor {ECO:0000313|EMBL:AKD58761.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
TonB-dependent receptor
SCNpilot_cont_300_bf_scaffold_232_curated_19
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21500..24361
DNA (2862bp) protein (954aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036ED258
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADB40455.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_20
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

24603..25616
DNA (1014bp) protein (338aa)
NADPH:quinone reductase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036814AE
zinc-binding alcohol dehydrogenase
Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:ADB39918.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_21
Geofilum rubicundum, Geofilum, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25754..26110)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037D068A
Uncharacterized protein {ECO:0000313|EMBL:GAO31812.1}; TaxID=1236989 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Marinilabiliaceae; Geofilum.;" source="Geofilum rubicundum JCM 15548.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_232_curated_22
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26100..26414)
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000372FA5A
hypothetical protein; K07075
Tax=RBG_13_Deltaproteobacteria_61_14_curated
SCNpilot_cont_300_bf_scaffold_232_curated_23
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26510..30859)
DNA (4350bp) protein (1450aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C681C
SCNpilot_cont_300_bf_scaffold_232_curated_24
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30980..34849)
DNA (3870bp) protein (1290aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta n=1 Tax=Spirosoma panaciterrae RepID=UPI00036AAB94
SCNpilot_cont_300_bf_scaffold_232_curated_25
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(35179..35565)
DNA (387bp) protein (129aa)
50S ribosomal protein L7 n=1 Tax=Spirosoma panaciterrae RepID=UPI0003684F62
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_26
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(35683..36216)
DNA (534bp) protein (178aa)
50S ribosomal protein L10 n=1 Tax=Spirosoma panaciterrae RepID=UPI0003608AFD
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_27
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(36220..36918)
DNA (699bp) protein (233aa)
50S ribosomal protein L1 n=1 Tax=Spirosoma panaciterrae RepID=UPI00036901DE
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_28
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists


comp(36945..37388)
DNA (444bp) protein (148aa)
50S ribosomal protein L11 n=1 Tax=Spirosoma panaciterrae RepID=UPI00035E215D
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_29
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(37557..38117)
DNA (561bp) protein (187aa)
transcription antitermination protein NusG n=1 Tax=Spirosoma panaciterrae RepID=UPI0003602CA6
NusG antitermination factor; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_232_curated_30
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(38230..38421)
DNA (192bp) protein (64aa)
preprotein translocase n=1 Tax=Spirosoma panaciterrae RepID=UPI00038176F6
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
Displaying items 1-30 of 89 in total

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