ggKbase home page

SCNpilot_cont_300_bf_scaffold_940_curated

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_940_curated_1
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

687..1385
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000376D5EB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38904.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_940_curated_2
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1400..2287)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037F04A0
Uncharacterized protein {ECO:0000313|EMBL:AKD56038.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_940_curated_3
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2346..4055)
DNA (1710bp) protein (570aa)
alpha-amylase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037FF337
Alpha-amylase {ECO:0000313|EMBL:AKD56037.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
alpha amylase
SCNpilot_cont_300_bf_scaffold_940_curated_4
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4185..6059
DNA (1875bp) protein (625aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C9D30
Alpha-amylase {ECO:0000313|EMBL:AIZ63177.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
alpha amylase catalytic region
SCNpilot_cont_300_bf_scaffold_940_curated_5
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6149..7732
DNA (1584bp) protein (528aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003732249
PAS/PAC sensor signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_940_curated_6
unknown

Not on your lists

7823..8233
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037ACB4B
SCNpilot_cont_300_bf_scaffold_940_curated_7
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(8299..9678)
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003619FEC
creD; Inner membrane protein creD
Inner membrane protein creD {ECO:0000313|EMBL:CCH02244.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_940_curated_8
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

9821..10474
DNA (654bp) protein (218aa)
beta-phosphoglucomutase; K01838 beta-phosphoglucomutase [EC:5.4.2.6]
beta-phosphoglucomutase n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C123F
Beta-phosphoglucomutase {ECO:0000313|EMBL:AKD58556.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
SCNpilot_cont_300_bf_scaffold_940_curated_9
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10656..13190)
DNA (2535bp) protein (845aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003736C00
Uncharacterized protein {ECO:0000313|EMBL:ADB38889.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_940_curated_10
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(13478..14188)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036B94E8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB38887.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_940_curated_11
unknown

Not on your lists

comp(14508..14621)
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_940_curated_12
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14739..15299)
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00036B072F
Uncharacterized protein {ECO:0000313|EMBL:EOR94334.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
Cupin 2 conserved barrel domain protein
SCNpilot_cont_300_bf_scaffold_940_curated_13
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

15693..16655
DNA (963bp) protein (321aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W350_DYAFD
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ACT92154.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_300_bf_scaffold_940_curated_14
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

16685..17485
DNA (801bp) protein (267aa)
Transcriptional regulator, AraC family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W349_DYAFD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACT96653.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
SCNpilot_cont_300_bf_scaffold_940_curated_15
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17572..18087)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000361D415
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EOR95981.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
Helix-turn-helix, AraC domain-containing protein
SCNpilot_cont_300_bf_scaffold_940_curated_16
unknown

Not on your lists

comp(18090..18428)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000361D415
SCNpilot_cont_300_bf_scaffold_940_curated_17
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18425..18853)
DNA (429bp) protein (143aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EOR95982.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EOR95982.1};; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003679865
estradiol 17-beta-dehydrogenase
SCNpilot_cont_300_bf_scaffold_940_curated_18
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18863..19234)
DNA (372bp) protein (124aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:EOR95982.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EOR95982.1};; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003679865
short chain dehydrogenase
SCNpilot_cont_300_bf_scaffold_940_curated_19
Aphanizomenon flos-aquae, Aphanizomenon, Nostocales, Cyanobacteria, Bacteria

Not on your lists

19508..20041
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI000382F2EF
Transposase {ECO:0000313|EMBL:KHG40226.1}; TaxID=1532906 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Aphanizomenon.;" source="Aphanizomenon flos-aquae 2012/KM1/D3.;"
transposase IS4 family protein
SCNpilot_cont_300_bf_scaffold_940_curated_20
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

19989..20456
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI000382F2EF
Microcystis aeruginosa PCC 7806 genome sequencing data, contig C327 {ECO:0000313|EMBL:CAO91283.1}; Similar to tr|Q8YZ89|Q8YZ89 {ECO:0000313|EMBL:CAO89046.1}; TaxID=267872 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa PCC 7806.;"
transposase IS4 family protein
SCNpilot_cont_300_bf_scaffold_940_curated_21
unknown

Not on your lists

comp(20372..20554)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_940_curated_22
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20551..22707)
DNA (2157bp) protein (719aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GDW0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH52084.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_940_curated_23
unknown

Not on your lists

comp(22704..23306)
DNA (603bp) protein (201aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_940_curated_24
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23315..29155)
DNA (5841bp) protein (1947aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GDV8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH52082.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_940_curated_25
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(29152..30843)
DNA (1692bp) protein (564aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003760D31
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ16449.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCNpilot_cont_300_bf_scaffold_940_curated_26
unknown

Not on your lists

comp(30877..31158)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_940_curated_27
unknown

Not on your lists

comp(31188..31721)
DNA (534bp) protein (178aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_940_curated_28
unknown

Not on your lists

31727..31939
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_940_curated_29
BJP_08E140C01_Bacteroidetes_41_49, Bacteroidetes, Bacteria

Not on your lists

comp(31863..33395)
DNA (1533bp) protein (511aa)
Putative uncharacterized protein id=4323068 bin=GWF2_Bacteroidetes_41_61 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
hypothetical protein
Tax=BJP_08E140C01_Bacteroidetes_41_49
SCNpilot_cont_300_bf_scaffold_940_curated_30
unknown

Not on your lists

comp(33686..34390)
DNA (705bp) protein (235aa)

This feature has no annotations

Displaying items 1-30 of 35 in total

View Taxonomy