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SCNpilot_cont_300_bf_scaffold_2066_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_2066_curated_1
Acinetobacter oleivorans, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..672
DNA (672bp) protein (224aa)
hypothetical protein, partial n=1 Tax=Enterobacteriaceae bacterium LSJC7 RepID=UPI00036DBDF3
Type I secretion protein {ECO:0000313|EMBL:KHN66388.1}; Flags: Fragment;; TaxID=1148157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter oleivorans.;"
putative adhesin for cattle intestine colonization
SCNpilot_cont_300_bf_scaffold_2066_curated_2
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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702..2204
DNA (1503bp) protein (501aa)
hypothetical protein; K14266 FADH2 O2-dependent halogenase I [EC:1.14.14.7]
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037531F1
Strain MEJ086 contig_96, whole genome shotgun sequence {ECO:0000313|EMBL:KIP90882.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
SCNpilot_cont_300_bf_scaffold_2066_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2190..2468)
DNA (279bp) protein (93aa)
Flagellar transcriptional regulator FlhD n=1 Tax=Variovorax paradoxus B4 RepID=T1XEN7_VARPD
putative flagellar transcriptional activator FlhD
Flagellar transcriptional regulator FlhD {ECO:0000256|HAMAP-Rule:MF_00725, ECO:0000256|SAAS:SAAS00011626}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_2066_curated_4
Trabulsiella guamensis, Trabulsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2465..3745)
DNA (1281bp) protein (427aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036671F8
Uncharacterized protein {ECO:0000313|EMBL:KFC10046.1}; TaxID=1005994 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Trabulsiella.;" source="Trabulsiella guamensis ATCC 49490.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_2066_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3755..5053)
DNA (1299bp) protein (433aa)
HlyD family secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI0003815534
HlyD family type I secretion membrane fusion protein; K12542 membrane fusion protein LapC
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ADU39197.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_2066_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5040..7157)
DNA (2118bp) protein (706aa)
ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037EAFB5
Type I secretion system ATPase {ECO:0000313|EMBL:ADU39198.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
type I secretion system ATPase; K12541 ATP-binding cassette, subfamily C, bacterial LapB
SCNpilot_cont_300_bf_scaffold_2066_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7154..8581)
DNA (1428bp) protein (476aa)
type I secretion protein TolC n=1 Tax=Variovorax paradoxus RepID=UPI00037F6561
TolC family type I secretion outer membrane protein; K12543 outer membrane protein LapE
Type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:ADU39199.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_2066_curated_8
Acinetobacter oleivorans, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8652..9269)
DNA (618bp) protein (206aa)
hypothetical protein, partial n=1 Tax=Enterobacteriaceae bacterium LSJC7 RepID=UPI00036DBDF3
Type I secretion protein {ECO:0000313|EMBL:KHN66388.1}; Flags: Fragment;; TaxID=1148157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter.;" source="Acinetobacter oleivorans.;"
putative adhesin for cattle intestine colonization
Displaying 8 items

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