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SCNpilot_cont_300_bf_scaffold_180_curated_38

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(35112..36596)

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Variovorax paradoxus RepID=UPI00035CB0C0 similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 489.0
  • Bit_score: 824
  • Evalue 5.80e-236
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33696.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.1
  • Coverage: 474.0
  • Bit_score: 798
  • Evalue 4.80e-228
NodT family RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 458.0
  • Bit_score: 790
  • Evalue 2.90e-226

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1485
GTGACGCCGCCGCGCCTGGCCGCTCCGCTCGCCCTGCTGGCCGCCATGCTGGTGGCGGGCTGCGCGGTCGGCCCCGACTACAAGACGCCGGACACGCCCCTGCCCGTCAGCTGGAAGCTCGAGGAGCCCTGGCGCGTGAGCGCACCCAACGACGCCGCCGACAAGGGCCCCTGGTGGCGCCGCTTCGGCGACCCGCAGCTCGACGCGCTGCAGCAGCAGGCGCTTGCCGGCAGCCCCACGCTGGCCATCGCCAATGCGCGGCTGGCGCAGGCGCGCGCCACGCTCGCGGCCAACGCGGCCGGCCAGTATCCGCAGGTCGGCCTCGGCACCCGCGCCTCGCGCCTGCGGATTTCGGCCAACCGCCCGCTCACCAACTACGCGACGCCCAATTCGACGACGGTGCAGAACGACTTCGCGCTGTCGCTCAACGCAAGCTACGAAGTCGACCTGGCCGGCCGCGTGCAGCGCACGGTCGAAGGCGCCAAGGCCTCGGCCGAACAATCGGCCGCCGACCTGCAGAACACCCGGCTGCTGCTGAGCGCCGACGTGGCCAGCAGCTACTTCAACCTGCGCTCCACCGACATCGAGCTCGACGTGGTCACGCGCTCCATCGCCCTGCAGCGCCGCGCGCTCGAACTGGTGACGGCGCGCCACGACCTGGGCGCCGTGTCGGGCCTCGACGTGGCGCAGCAGCAGTCGCTGCTCGAGACCACGCTGACGCAGGTCGACGTGCTGAGGAAGCAGCGCTCGCAGTACGAGCACGCGCTGGCCACGCTCACCGGCACGCCCGCGCCCAGCTTCTCGCTGCCGGTGGACCTGCGCGAGATCAGGCCGCCGGCCGTGCCGCTGGGCGTGCCCTCCGAGATACTGCAGCGCCGCCCCGACGTGGCCTCGGCCGAACGCGCGATGGCCGCCGCCAATGCGCAGATCGGCGTCGCCACCGCGGCCTTCTACCCGAGCATCTTCATCTCGCCCACCGTGGGCGTGGACAGCCGCACGATCGAGACGCTGTTCAACGGCCCGAGCCTGCTGTGGTCGGTGGGCGTGTCGGCCACGCAGGTGTTGTTCGACGGTGGGCGCATCCGCGCCAACGTCGACTTCGCGAAGGCCGGCTACGACGTCACCGTCGGCAACTACCGCCGCACCGTGCTGACCGCGATGCAGGAGGTGGAAGACGGCATCACCGGCCTTTCCGCGCTAGACAGCGCGACGGCGCAGGCACAGGCCGCCGTGACCGCCGCGCGCCGCGTGCTCGACATGGCCACCAGCCGCTACGAGGGCGGTGCGTCGACCTACCTGGACGTGATCACCGCGCAGCAGTCGCTGCTGACGGTGGAGCGCCAGGCCGCGCAACTGCGTGGGCAGCGGCTGCTGACGGCGGTGTTCCTGGTGAAGGCGCTGGGTGGGGATTGGTGCGGCGATGATGCCGCGGGCGGAGCAGGCTGCCCCACCGCGGCTGCGCGGCAAGTCGTCGGCACGCGCTGA
PROTEIN sequence
Length: 495
VTPPRLAAPLALLAAMLVAGCAVGPDYKTPDTPLPVSWKLEEPWRVSAPNDAADKGPWWRRFGDPQLDALQQQALAGSPTLAIANARLAQARATLAANAAGQYPQVGLGTRASRLRISANRPLTNYATPNSTTVQNDFALSLNASYEVDLAGRVQRTVEGAKASAEQSAADLQNTRLLLSADVASSYFNLRSTDIELDVVTRSIALQRRALELVTARHDLGAVSGLDVAQQQSLLETTLTQVDVLRKQRSQYEHALATLTGTPAPSFSLPVDLREIRPPAVPLGVPSEILQRRPDVASAERAMAAANAQIGVATAAFYPSIFISPTVGVDSRTIETLFNGPSLLWSVGVSATQVLFDGGRIRANVDFAKAGYDVTVGNYRRTVLTAMQEVEDGITGLSALDSATAQAQAAVTAARRVLDMATSRYEGGASTYLDVITAQQSLLTVERQAAQLRGQRLLTAVFLVKALGGDWCGDDAAGGAGCPTAAARQVVGTR*