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SCNpilot_cont_300_bf_scaffold_180_curated_39

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(36593..37840)

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7Q2_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 90.4
  • Coverage: 417.0
  • Bit_score: 724
  • Evalue 5.30e-206
RND family efflux transporter mfp subunit similarity KEGG
DB: KEGG
  • Identity: 90.4
  • Coverage: 417.0
  • Bit_score: 724
  • Evalue 1.70e-206
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADU36065.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.4
  • Coverage: 417.0
  • Bit_score: 724
  • Evalue 7.40e-206

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1248
ATGACGGAGCAACGCCATTCGGCACTGGCCATCCACCCCATCGCCGTGGAAGAAGGCGACGGCGAGTTGCTGCGCCGCCGGCAGATCGTGCGGCGCACGCGCTGGCTGGTGCTGATCGTTCTCGTGCTGCTGGGGCTGGGCGCGGCGCGCACGGTGTTCGTGCGCATCGCCAACGCCCGCGCGCTCGAGGCGGGCACGACGGAGCGCGCGAAGCAGTACGTGCAGACCGCCCTGCCCCGCACGCCCACCGCCGGCCAGACGCTGTCGCTGCCGGGCACGCTGCAGGGCTTCGTGCAGTCGCCCATTTCGGCGCGCGCCAGCGGCTACCTCAAGCGCTGGACCAAGGACATCGGCAGCCGCGTCGAAAAGGGCGAACTGCTCGCCGAGATCGAGACGCCCGAGATCGACCAGCAGCTGTCGCAGGCCGTGGCCGCGCGTGCGCAGGCGGCCTCCGGCCTGGAGCTGGCACGCAGCACCGCCGACCGCTGGGAAGCGCTGCGCAAGAAGGACGTGGTCTCGCAGCAGGAGCTGGACGAACGCCGCAGCGCGGTGGCGCAAGCCACCTCCAACGTGGCGGCGGCCGACGCCAACGTGCAGCGGCTGAAACAGACCGAAGGCTTCAAGCGCGTGGTGGCGCCGTTCGCGGGCGTGATCACGCGGCGCAACGTCGACGTGGGCGACCTGATCGACGCGGGCAGCGGCGGCGGCGCCGGGCGCGCGTTGTTCCTGCTGGCGCAGACCGATCCGCTGCGCGTGTACATCAACGTGCCGCAGGCCTACGCCCAGCTCGTGAAGGCGGGGCAACCGGTAGTGGTGACCCAGGCCGAGCTGCGTGGCCAGACCTTCAAGGGCCAGGTGGCACGCACCGCCGGCTCCATCGACACGACCACGCGGATGATGCAGGTCGAGGTGTCGCTGCCCAACAGCGACGGCGCGCTGCTGCCGGGTGCCTATGTGCAGGTGTCGCTGCCGCTGGCCGCCAGCCGCACGCTGTCGGTGCCGTCGAACGCGCTGCTGTTCCGCGCCGAGGGCACGCGGATTGCCGTGGTCGACCCGCAGGGCCGCGTCAACCTGCGCGCGGTGACGCTGGGCCGCAACTACGGCGAGAACGTCGAAGTGATCGACGGCCTCGAGCACACCGACCGCATGGTGCTGAACCCGTCCGATTCGCTGGCCGAAGGCGACGTGGTGGCAGTGGCGCCCGAGACGCCGCCCGCCAAGGCCCCCACGCCGAAGGCCCCGGCGTGA
PROTEIN sequence
Length: 416
MTEQRHSALAIHPIAVEEGDGELLRRRQIVRRTRWLVLIVLVLLGLGAARTVFVRIANARALEAGTTERAKQYVQTALPRTPTAGQTLSLPGTLQGFVQSPISARASGYLKRWTKDIGSRVEKGELLAEIETPEIDQQLSQAVAARAQAASGLELARSTADRWEALRKKDVVSQQELDERRSAVAQATSNVAAADANVQRLKQTEGFKRVVAPFAGVITRRNVDVGDLIDAGSGGGAGRALFLLAQTDPLRVYINVPQAYAQLVKAGQPVVVTQAELRGQTFKGQVARTAGSIDTTTRMMQVEVSLPNSDGALLPGAYVQVSLPLAASRTLSVPSNALLFRAEGTRIAVVDPQGRVNLRAVTLGRNYGENVEVIDGLEHTDRMVLNPSDSLAEGDVVAVAPETPPAKAPTPKAPA*