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SCNpilot_cont_300_bf_scaffold_421_curated_39

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 53343..53669

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036F06A5 similarity UNIREF
DB: UNIREF100
  • Identity: 99.1
  • Coverage: 108.0
  • Bit_score: 212
  • Evalue 2.30e-52
Integration host factor subunit beta {ECO:0000256|RuleBase:RU003941, ECO:0000256|SAAS:SAAS00062449}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.2
  • Coverage: 108.0
  • Bit_score: 209
  • Evalue 2.10e-51
integration host factor subunit beta; K05788 integration host factor subunit beta similarity KEGG
DB: KEGG
  • Identity: 97.2
  • Coverage: 108.0
  • Bit_score: 203
  • Evalue 3.40e-50

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 327
ATGACCCGCTCAGACCTCGTCGAAGAACTCGCAGCCCGCTTTGCGCAACTGACGCACCGCGACGCCGAATACGCAGTCAAGACCATCCTCGACGCGATGAGCGACGCGCTGGTGCGCGGACACCGCATCGAGATCCGTGGCTTCGGCAGCTTCTCGGTCAACCGCCGTCCGCCGCGCATCGGCCGCAACCCGCGTTCGGGCGAGAGCGTGCAGATCCCCGAAAAACGGGTGCCGCACTTCAAGCCCGGCAAGGCGCTGCGCGAAGCGGTGGATGCCAAGACGGCAGAGCTCGACGCCGGCAAGGAAGCCAAGGCCCGCAAGGCCTGA
PROTEIN sequence
Length: 109
MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVNRRPPRIGRNPRSGESVQIPEKRVPHFKPGKALREAVDAKTAELDAGKEAKARKA*