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SCNpilot_cont_300_bf_scaffold_174_curated_141

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 166141..166965

Top 3 Functional Annotations

Value Algorithm Source
virulence protein, SciE type n=1 Tax=Variovorax paradoxus RepID=UPI00036304AE similarity UNIREF
DB: UNIREF100
  • Identity: 89.9
  • Coverage: 278.0
  • Bit_score: 507
  • Evalue 6.70e-141
Protein of avirulence locus involved in temperature-dependent protein secretion {ECO:0000313|EMBL:EJL75067.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.7
  • Coverage: 272.0
  • Bit_score: 497
  • Evalue 9.80e-138
virulence protein scie type; K11898 type VI secretion system protein ImpE similarity KEGG
DB: KEGG
  • Identity: 88.3
  • Coverage: 274.0
  • Bit_score: 491
  • Evalue 2.00e-136

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Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 825
ATGACGACGACCGCCGCCGAATTTCTCAAGGCCGCCGACCCCGCCGCCGCCCTCAAGGCCTTGAGCGACGATGTGCGCGCCAAGCCTTCCGACAGCAGGCACCGCGTGTTCATGGCCCAGCTGCTGTGCGTGCTGGGCCAGTGGGAGCGCGCGCTGAACCAGCTCACCGTGGCCGCCGAACTCGATGCGCTGGCCGTGCCCATGAAGCAGATGTACGGCGACGCGGTGCGCTGCGAGGGCCTGCGCGCGGACGTGTTCGCGGGCAAGCGCACGCCGATGATCTTCGGCCAGCCCGACGAATGGCTGGCGCTGCTCATCGAGTCGCTGCTGCGGCAGGGCCGCGGCGAGAGCGAGCTGGCCGAAGACCTGCGCCAGCGCGCCTTCGATGGCGCGCCCGCCATCGGCGGCACCATCGACGGCACACCCTTCGAATGGCTGGCCGACGCCGACATGCGCCTGGGCCCGGTGCTCGAGGCCTTCGTCAACGGCAAGTACTACTGGGTTCCGTATGCGCGGCTCGCGCACATCAAGATCGATCCGCCCGAAGACCTGCGCGACTGCGTGTGGATGCCCGCGCACCTGCAGTTCGAGAACGGCGGCGAAACGCTCGCGCTGATTCCCACGCGCTACGAAGGCACCGAGCAGACCGGCGACGGCGAGCTGCTTCTCGCGCGCAAGACCGAATGGCGCGAGCTGCGGCCCGAGGTGTGGGCCGGGCATGGCCAGCGCGTGCTGAGCAGCAGCGACGGCAGCGAGCATGCGCTGATGGACGTGCGCGAGATCCTCTTCGCGCCCGTTGCCGAGCCGGGCGAAGCCGATGGCTGA
PROTEIN sequence
Length: 275
MTTTAAEFLKAADPAAALKALSDDVRAKPSDSRHRVFMAQLLCVLGQWERALNQLTVAAELDALAVPMKQMYGDAVRCEGLRADVFAGKRTPMIFGQPDEWLALLIESLLRQGRGESELAEDLRQRAFDGAPAIGGTIDGTPFEWLADADMRLGPVLEAFVNGKYYWVPYARLAHIKIDPPEDLRDCVWMPAHLQFENGGETLALIPTRYEGTEQTGDGELLLARKTEWRELRPEVWAGHGQRVLSSSDGSEHALMDVREILFAPVAEPGEADG*