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SCNpilot_cont_500_bf_scaffold_18857

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_18857_1
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..523
DNA (522bp) protein (174aa)
Elongation factor Tu n=2 Tax=Thioalkalivibrio RepID=B8GV60_THISH
elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=396588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
SCNpilot_cont_500_bf_scaffold_18857_trna_1
unknown

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578..650
DNA (73bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_18857_2
Agarivorans albus, Agarivorans, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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709..1056
DNA (348bp) protein (116aa)
Protein translocase subunit SecE n=1 Tax=Agarivorans albus MKT 106 RepID=R9PSB6_AGAAL
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1331007 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Agarivorans.;" source="Agarivorans albus MKT 106.;"
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
SCNpilot_cont_500_bf_scaffold_18857_3
Marinobacter manganoxydans, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1060..1608
DNA (549bp) protein (183aa)
transcription antitermination protein NusG n=1 Tax=Oceanimonas smirnovii RepID=UPI0003709D5F
transcription termination/antitermination factor NusG; K02601 transcriptional antiterminator NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1094979 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter manganoxydans MnI7-9.;"
SCNpilot_cont_500_bf_scaffold_18857_4
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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1780..2211
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=1 Tax=Marinobacterium stanieri RepID=UPI0002559332
rplK; 50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
SCNpilot_cont_500_bf_scaffold_18857_5
Providencia rustigianii, Providencia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2218..2832
DNA (615bp) protein (205aa)
50S ribosomal protein L1 n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B73957
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=500637 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Providencia.;" source="Providencia rustigianii DSM 4541.;"
SCNpilot_cont_500_bf_scaffold_18857_6
gamma proteobacterium IMCC3088, Gammaproteobacteria, Proteobacteria, Bacteria

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3284..3712
DNA (429bp) protein (143aa)
50S ribosomal protein L10 n=1 Tax=gamma proteobacterium IMCC3088 RepID=F3L4H2_9GAMM
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=876044 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="gamma proteobacterium IMCC3088.;"
rplJ; 50S ribosomal protein L10
SCNpilot_cont_500_bf_scaffold_18857_7
Teredinibacter turnerae, Teredinibacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3754..4131
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Teredinibacter turnerae (strain ATCC 39867 / T7901) RepID=RL7_TERTT
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=377629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadales genera incertae sedis; Teredinibacter.;" source="Teredinibacter turnerae (strain ATCC 39867 / T7901).;"
SCNpilot_cont_500_bf_scaffold_18857_8
Coxiellaceae bacterium HT99, Legionellales, Gammaproteobacteria, Proteobacteria, Bacteria

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4241..5431
DNA (1191bp) protein (397aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1590043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae.;" source="Coxiellaceae bacterium HT99.;"
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 / SA1) RepID=K4KJ11_SIMAS
Displaying 9 items

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