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SCNpilot_cont_500_bf_scaffold_4311

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_4311_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..908
DNA (906bp) protein (302aa)
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase n=1 Tax=Rhodanobacter denitrificans RepID=M4NAN1_9GAMM
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase {ECO:0000313|EMBL:AGG87554.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_4311_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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954..1556
DNA (603bp) protein (201aa)
Peptidase S16, lon domain protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHQ3_9GAMM
peptidase S16, lon domain protein
Peptidase S16, lon domain protein {ECO:0000313|EMBL:AGG87555.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_4311_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1601..1942
DNA (342bp) protein (114aa)
Short chain dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT6_9GAMM
Short chain dehydrogenase {ECO:0000313|EMBL:EIL97627.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_cont_500_bf_scaffold_4311_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1956..2339
DNA (384bp) protein (128aa)
Short chain dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT6_9GAMM
Short chain dehydrogenase {ECO:0000313|EMBL:EIL97627.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_cont_500_bf_scaffold_4311_5
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2498..3841
DNA (1344bp) protein (448aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Rhodanobacter denitrificans RepID=M4NCP7_9GAMM rbh
Fis family transcriptional regulator {ECO:0000313|EMBL:AIF45761.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains rbh
SCNpilot_cont_500_bf_scaffold_4311_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3866..5206)
DNA (1341bp) protein (447aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000310B621 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY58247.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_4311_7
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5251..6039)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F0CC87
NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96216.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4311_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6052..6753)
DNA (702bp) protein (234aa)
Bacteriocin resistance protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TLK0_STEMA rbh
Bacteriocin resistance protein {ECO:0000313|EMBL:EMI50057.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
peptidase C39 bacteriocin processing rbh
SCNpilot_cont_500_bf_scaffold_4311_9
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6906..8096)
DNA (1191bp) protein (397aa)
adhesin n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030F90F8
NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96218.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
putative YadA/Hep-Hag like protein
SCNpilot_cont_500_bf_scaffold_4311_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8134..8754)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4WC09_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKC88284.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4311_11
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8768..9289)
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E6E9B4
Uncharacterized protein {ECO:0000313|EMBL:EZP47264.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_4311_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9672..10610
DNA (939bp) protein (313aa)
Acetylornithine aminotransferase {ECO:0000256|HAMAP-Rule:MF_01107}; Short=ACOAT {ECO:0000256|HAMAP-Rule:MF_01107};; EC=2.6.1.11 {ECO:0000256|HAMAP-Rule:MF_01107};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Acetylornithine aminotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT5_9GAMM
acetylornithine/succinylornithine aminotransferase
SCNpilot_cont_500_bf_scaffold_4311_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11232..12425)
DNA (1194bp) protein (398aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHQ8_9GAMM
glutamate-1-semialdehyde-2,1-aminomutase
SCNpilot_cont_500_bf_scaffold_4311_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12433..13068)
DNA (636bp) protein (212aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodano
Thiamine-phosphate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDT2_9GAMM
thiamine-phosphate pyrophosphorylase
SCNpilot_cont_500_bf_scaffold_4311_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13438..13629
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WHR1_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying 15 items

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