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SCNpilot_cont_500_bf_scaffold_2414

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2414_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(168..665)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK21_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL99812.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2414_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(845..2287)
DNA (1443bp) protein (481aa)
Phospholipase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK20_9GAMM
Phospholipase {ECO:0000313|EMBL:EIL99811.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2414_3
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2420..3175
DNA (756bp) protein (252aa)
Lipoprotein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W115_9GAMM rbh
Lipoprotein {ECO:0000313|EMBL:EIL93156.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
lipoprotein transmembrane
SCNpilot_cont_500_bf_scaffold_2414_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3226..4656)
DNA (1431bp) protein (477aa)
Aldehyde dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W711_9GAMM rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:EIL95252.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD-dependent aldehyde dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_2414_5
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4938..6734
DNA (1797bp) protein (599aa)
thiamine pyrophosphate protein (EC:1.2.2.2); K00156 pyruvate dehydrogenase (quinone) [EC:1.2.5.1] rbh
Pyruvate oxidase {ECO:0000313|EMBL:ABA56994.1}; EC=2.2.1.6 {ECO:0000313|EMBL:ABA56994.1};; TaxID=323261 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848).;"
Pyruvate oxidase n=2 Tax=Nitrosococcus oceani RepID=Q3JDV2_NITOC rbh
SCNpilot_cont_500_bf_scaffold_2414_6
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6745..7827
DNA (1083bp) protein (361aa)
Putative racemase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FVH9_SORC5
racemase
Putative racemase {ECO:0000313|EMBL:CAN92278.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_cont_500_bf_scaffold_2414_7
unknown

Not on your lists

7865..8062
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2414_8
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

8059..11019
DNA (2961bp) protein (987aa)
hypothetical protein n=1 Tax=Methylosarcina fibrata RepID=UPI00036EED35 rbh
FAD linked oxidase domain protein {ECO:0000313|EMBL:CCF82967.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
FAD linked oxidase; K06911 rbh
SCNpilot_cont_500_bf_scaffold_2414_9
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

11016..12089
DNA (1074bp) protein (358aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5S6M0_9PLAN rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EMI21824.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
short chain dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_2414_10
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

12086..12463
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WIU0_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ20330.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113.;"
SCNpilot_cont_500_bf_scaffold_2414_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12585..13889)
DNA (1305bp) protein (435aa)
Exodeoxyribonuclease VII large subunit (EC:3.1.11.6) rbh
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Rhodanobacter denitrificans RepID=M4NEN3_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_2414_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13949..15367)
DNA (1419bp) protein (473aa)
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NES6_9GAMM rbh
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase rbh
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:AGG89304.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2414_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15384..17378
DNA (1995bp) protein (665aa)
Acetyl-CoA hydrolase/transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK14_9GAMM rbh
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:EIL99805.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2414_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17538..17720)
DNA (183bp) protein (61aa)
Cytochrome oxidase maturation protein, cbb3-type n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WK13_9GAMM
cytochrome oxidase maturation protein, cbb3-type
Cbb3-type cytochrome oxidase maturation protein {ECO:0000313|EMBL:EIL93167.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
SCNpilot_cont_500_bf_scaffold_2414_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17717..19600)
DNA (1884bp) protein (628aa)
Putative cation-transporting ATPase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W720_9GAMM
Putative cation-transporting ATPase {ECO:0000313|EMBL:EIL95261.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
heavy metal translocating P-type ATPase
SCNpilot_cont_500_bf_scaffold_2414_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19600..19881)
DNA (282bp) protein (94aa)
Heavy metal translocating P-type ATPase (Fragment) n=1 Tax=Rhodanobacter denitrificans RepID=I4WX93_9GAMM
heavy metal translocating P-type ATPase
Heavy metal translocating P-type ATPase {ECO:0000313|EMBL:AGG89301.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2414_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19878..20117)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDM0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97561.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2414_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20101..21009)
DNA (909bp) protein (303aa)
Cbb3-type cytochrome c oxidase subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W722_9GAMM
Cbb3-type cytochrome c oxidase subunit {ECO:0000256|PIRNR:PIRNR000006}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c oxidase, cbb3-type, subunit III
SCNpilot_cont_500_bf_scaffold_2414_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21006..21176)
DNA (171bp) protein (57aa)
Cbb3-type cytochrome oxidase component FixQ n=1 Tax=Rhodanobacter denitrificans RepID=I4WX96_9GAMM
Cbb3-type cytochrome oxidase component FixQ
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_500_bf_scaffold_2414_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21173..21838)
DNA (666bp) protein (222aa)
Cbb3-type cytochrome c oxidase subunit II n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W724_9GAMM rbh
Cbb3-type cytochrome c oxidase subunit II {ECO:0000313|EMBL:EIL95265.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c oxidase, cbb3-type, subunit II
SCNpilot_cont_500_bf_scaffold_2414_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21851..22663)
DNA (813bp) protein (271aa)
Cytochrome-cbb3 oxidase, subunit I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W725_9GAMM
Cytochrome-cbb3 oxidase, subunit I {ECO:0000313|EMBL:EIL95266.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c oxidase, cbb3-type, subunit I
SCNpilot_cont_500_bf_scaffold_2414_22
unknown

Not on your lists

22786..23022
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2414_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23433..24692
DNA (1260bp) protein (420aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase (EC:1.17.7.1) rbh
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDM5_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_2414_24
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24685..25416)
DNA (732bp) protein (244aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W727_9GAMM rbh
leucyl/phenylalanyl-tRNA--protein transferase rbh
SCNpilot_cont_500_bf_scaffold_2414_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25413..26480)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WDM8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97569.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2414_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26582..27544)
DNA (963bp) protein (321aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Thioredoxin reductase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXA4_9GAMM rbh
thioredoxin-disulfide reductase rbh
Displaying 26 items

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