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SCNpilot_cont_500_bf_scaffold_2636

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2636_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..613
DNA (612bp) protein (204aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDP1_9GAMM
nucleoside-diphosphate-sugar epimerase
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGG88854.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_500_bf_scaffold_2636_2
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

616..2478
DNA (1863bp) protein (621aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDP1_9GAMM
DNA polymerase III subunit epsilon {ECO:0000313|EMBL:KGM56793.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
nucleoside-diphosphate-sugar epimerase
SCNpilot_cont_500_bf_scaffold_2636_3
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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2593..2925
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSZ5_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_cont_500_bf_scaffold_2636_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3073..5307
DNA (2235bp) protein (745aa)
Lead, cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase {ECO:0000313|EMBL:CCU62526.1}; EC=3.6.3.3 {ECO:0000313|EMBL:CCU62526.1};; EC=3.6.3.4 {ECO:0000313|EMBL:CCU62526.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
copper-translocating P-type ATPase (EC:3.6.3.4) rbh
Lead, cadmium, zinc and mercury transporting ATPase Copper-translocating P-type ATPase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGW6_9PROT rbh
SCNpilot_cont_500_bf_scaffold_2636_5
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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5357..7351
DNA (1995bp) protein (665aa)
Multicopper oxidase type 1 n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82XJ1_NITEU rbh
pcoA; multicopper oxidase type 1 rbh
Multicopper oxidase type 1 {ECO:0000313|EMBL:CAD84190.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
SCNpilot_cont_500_bf_scaffold_2636_6
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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7348..8214
DNA (867bp) protein (289aa)
Copper resistance B n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AJ75_NITEC rbh
copper resistance B precursor; K07233 copper resistance protein B rbh
Copper resistance B {ECO:0000313|EMBL:ABI58596.1}; Flags: Precursor;; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
SCNpilot_cont_500_bf_scaffold_2636_7
unknown

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8205..8447
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2636_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8483..9544)
DNA (1062bp) protein (354aa)
Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4S5Q6_YERBE
Membrane protein {ECO:0000313|EMBL:KIO48685.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2636_9
unknown

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9749..9970
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2636_10
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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10019..10417
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKE6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63324.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2636_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10494..11924
DNA (1431bp) protein (477aa)
Heavy metal RND efflux outer membrane protein,CzcC family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DVH1_9PROT
Heavy metal RND efflux outer membrane protein,CzcC family {ECO:0000313|EMBL:CCU63325.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
Outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
SCNpilot_cont_500_bf_scaffold_2636_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11921..13552
DNA (1632bp) protein (544aa)
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DIY1_9PROT
Hemolysin D {ECO:0000313|EMBL:KIO48668.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
RND family efflux transporter MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB rbh
SCNpilot_cont_500_bf_scaffold_2636_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13679..16843
DNA (3165bp) protein (1055aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Nitrosomonas sp. AL212 RepID=F0TD03_9PROT
Cation transporter {ECO:0000313|EMBL:KIO48669.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_500_bf_scaffold_2636_14
unknown

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16848..17078
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2636_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17083..19404
DNA (2322bp) protein (774aa)
cadmium-translocating P-type ATPase; K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Metal ABC transporter ATPase {ECO:0000313|EMBL:KIO48670.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Cadmium-translocating P-type ATPase id=1341268 bin=GWE1_T_denit_62_9 species=Gallionella capsiferriformans genus=Gallionella taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
SCNpilot_cont_500_bf_scaffold_2636_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19373..20632
DNA (1260bp) protein (420aa)
Cobalt/zinc/cadmium efflux RND transporter,membrane fusion protein, CzcB family n=1 Tax=Nitrosospira sp. APG3 RepID=M5DUS8_9PROT
Cation transporter {ECO:0000313|EMBL:KIO48671.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_500_bf_scaffold_2636_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20646..21032)
DNA (387bp) protein (129aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48666.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_500_bf_scaffold_2636_18
unknown

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comp(21181..21423)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2636_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21643..21987)
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO48674.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
SCNpilot_cont_500_bf_scaffold_2636_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22038..22814)
DNA (777bp) protein (259aa)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956, ECO:0000313|EMBL:KIO48675.1}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
carbonic anhydrase; K01673 carbonic anhydrase [EC:4.2.1.1] rbh
Carbonic anhydrase n=1 Tax=Nitrosomonas sp. AL212 RepID=F0TD01_9PROT rbh
SCNpilot_cont_500_bf_scaffold_2636_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23025..23330)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKE6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63324.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2636_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23842..24216
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=CRCB_GRABC
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
crcB family protein; K06199 CrcB protein
SCNpilot_cont_500_bf_scaffold_2636_23
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24325..24996
DNA (672bp) protein (224aa)
transcriptional regulator n=1 Tax=Zavarzinella formosa RepID=UPI0003176710
Two component heavy metal response transcriptional regulator {ECO:0000313|EMBL:EIT70863.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
two component heavy metal response transcriptional regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR rbh
SCNpilot_cont_500_bf_scaffold_2636_24
Methylobacter tundripaludum, Methylobacter, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25085..26419
DNA (1335bp) protein (445aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;"
sensor histidine kinase; K07644 two-component system, OmpR family, heavy metal sensor histidine kinase CusS [EC:2.7.13.3]
Heavy metal sensor signal transduction histidine kinase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3ITU1_9GAMM rbh
SCNpilot_cont_500_bf_scaffold_2636_25
unknown

Not on your lists

26376..26597
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2636_26
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26645..26995
DNA (351bp) protein (117aa)
Putative membrane protein required for alginate biosynthesis n=1 Tax=Pseudomonas sp. GM67 RepID=J3H7T8_9PSED
Membrane protein {ECO:0000313|EMBL:KJV32856.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
glpM; membrane protein GlpM
SCNpilot_cont_500_bf_scaffold_2636_27
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27295..28425
DNA (1131bp) protein (377aa)
MFS transporter n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003697FF6 rbh
Inner membrane transport protein YajR {ECO:0000313|EMBL:EXI88509.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
major facilitator transporter rbh
Displaying 27 items

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