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SCNpilot_cont_500_bf_scaffold_2778

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2778_1
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..407)
DNA (405bp) protein (135aa)
Plasmid replication protein RepA1 n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4P2_9XANT
Uncharacterized protein {ECO:0000313|EMBL:GAE55947.1}; Flags: Fragment;; TaxID=1418095 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni MAFF 301420.;"
SCNpilot_cont_500_bf_scaffold_2778_2
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(512..886)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4T5_9XANT
Transcriptional regulator {ECO:0000313|EMBL:GAE52566.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
SCNpilot_cont_500_bf_scaffold_2778_3
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(977..1285)
DNA (309bp) protein (103aa)
plasmid stabilization protein n=1 Tax=Marinobacter lipolyticus RepID=UPI00035FD32D
Plasmid, complete sequence {ECO:0000313|EMBL:AJO81904.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2778_4
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1289..2113)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Pseudomonas syringae RepID=I3W0F9_PSESX
Plasmid, complete sequence {ECO:0000313|EMBL:AJO81905.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
SCNpilot_cont_500_bf_scaffold_2778_5
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2110..2562)
DNA (453bp) protein (151aa)
Complete genome; segment 8/17 n=1 Tax=Photorhabdus luminescens subsp. laumondii (strain TT01) RepID=Q7N4G7_PHOLL
Plasmid, complete sequence {ECO:0000313|EMBL:AJO81906.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2778_6
Pseudomonas sp. CT14, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2858..3394)
DNA (537bp) protein (179aa)
Transposase TnpA2 n=22 Tax=Bacteria RepID=S0F1F6_KLEPN rbh
TnpA rbh
TnpA2 {ECO:0000313|EMBL:ABA25962.1}; TaxID=341029 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. CT14.;"
SCNpilot_cont_500_bf_scaffold_2778_7
Aeromonas veronii, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3406..3801)
DNA (396bp) protein (132aa)
Uncharacterized protein n=19 Tax=Bacteria RepID=B3V716_ECOLX
putative nucleic-acid-binding protein, contains PIN domain
Putative uncharacterized protein {ECO:0000313|EMBL:ADU79010.1}; TaxID=654 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas veronii.;"
SCNpilot_cont_500_bf_scaffold_2778_8
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3798..4049)
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI00036F28C3
regulator of stationary/sporulation gene expression
Transcriptional regulator {ECO:0000313|EMBL:KGK64920.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
SCNpilot_cont_500_bf_scaffold_2778_9
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4231..4797
DNA (567bp) protein (189aa)
DNA-invertase from lambdoid prophage e14 n=3 Tax=Proteobacteria RepID=M5D523_STEMA rbh
invertase rbh
Invertase {ECO:0000313|EMBL:KFJ92663.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
SCNpilot_cont_500_bf_scaffold_2778_10
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4927..5505
DNA (579bp) protein (193aa)
Invertase recombinase-like protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4T1_9XANT rbh
Invertase recombinase-like protein {ECO:0000313|EMBL:CCC18701.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
site-specific recombinase, DNA invertase Pin
SCNpilot_cont_500_bf_scaffold_2778_11
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5812..7044
DNA (1233bp) protein (411aa)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
pliMCI; DNA (cytosine-5)-methyltransferase PliMCI; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
Cytosine-specific methyltransferase n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XMQ9_9XANT rbh
SCNpilot_cont_500_bf_scaffold_2778_12
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7044..7946
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Cronobacter sakazakii (strain ATCC BAA-894) RepID=A7MRC6_CROS8 rbh
Uncharacterized protein {ECO:0000313|EMBL:CEH52152.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2778_13
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7963..8154)
DNA (192bp) protein (64aa)
Plasmid-like protein n=1 Tax=Xanthomonas axonopodis pv. malvacearum str. GSPB1386 RepID=K8FU84_9XANT
Plasmid-like protein {ECO:0000313|EMBL:CEL42668.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
plasmid-like protein
SCNpilot_cont_500_bf_scaffold_2778_14
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8167..8865)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4T0_9XANT rbh
Uncharacterized protein {ECO:0000313|EMBL:GAE52560.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
SCNpilot_cont_500_bf_scaffold_2778_15
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8882..9097)
DNA (216bp) protein (72aa)
Plasmid partition protein ParB, truncated n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S9_9XANT
Plasmid partition protein ParB, truncated {ECO:0000313|EMBL:GAE52559.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
plasmid partition protein ParB, truncated
SCNpilot_cont_500_bf_scaffold_2778_16
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9110..9739)
DNA (630bp) protein (210aa)
Plasmid partitioning protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S8_9XANT rbh
Plasmid partitioning protein {ECO:0000313|EMBL:CCC18698.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
ParaA family ATPase; K03496 chromosome partitioning protein rbh
SCNpilot_cont_500_bf_scaffold_2778_17
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9898..12282)
DNA (2385bp) protein (795aa)
Relaxase/mobilization protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S7_9XANT rbh
Plasmid, complete sequence {ECO:0000313|EMBL:AJO81912.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
relaxase/mobilization nuclease family protein rbh
SCNpilot_cont_500_bf_scaffold_2778_18
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12272..12406)
DNA (135bp) protein (45aa)
Putative relaxase protein MobC n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S6_9XANT
Uncharacterized protein {ECO:0000313|EMBL:GAE48495.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
SCNpilot_cont_500_bf_scaffold_2778_19
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12634..13539)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y3I8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD59073.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2778_20
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13965..14393
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S5_9XANT
Uncharacterized protein {ECO:0000313|EMBL:GAE48496.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2778_21
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14399..15103
DNA (705bp) protein (235aa)
Putative plasmid stable inheritance protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S4_9XANT rbh
Plasmid stability protein StbB {ECO:0000313|EMBL:GAE48497.1}; TaxID=1414836 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. MAFF 311562.;"
stbB_1; plasmid stability protein StbB rbh
SCNpilot_cont_500_bf_scaffold_2778_22
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15113..15667
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S3_9XANT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCC18693.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
SCNpilot_cont_500_bf_scaffold_2778_23
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15664..17271
DNA (1608bp) protein (536aa)
TraD protein n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4S2_9XANT rbh
TraD protein {ECO:0000313|EMBL:CCC18692.1}; TaxID=1045865 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni str. CFBP 5530.;"
trwB; Type IV secretion system protein
SCNpilot_cont_500_bf_scaffold_2778_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17820..18557
DNA (738bp) protein (246aa)
Type IV secretion system protein virB5 n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T116_XANCT rbh
Minor pilin of type IV secretion complex, VirB5 {ECO:0000313|EMBL:CDM24339.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
plasmid-related exported protein rbh
SCNpilot_cont_500_bf_scaffold_2778_25
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18569..19063
DNA (495bp) protein (165aa)
Putative plasmid-related protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KZE3_BORA1
plasmid-like protein
Putative plasmid-related protein {ECO:0000313|EMBL:CAJ47978.1}; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
SCNpilot_cont_500_bf_scaffold_2778_26
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19088..19324
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T4E6_XANCT
Uncharacterized protein {ECO:0000313|EMBL:CCP42018.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
plasmid-related lipoprotein
SCNpilot_cont_500_bf_scaffold_2778_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19327..20412
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T314_XANCT rbh
Inner membrane protein of type IV secretion of T-DNA complex, VirB6 {ECO:0000313|EMBL:CDM24336.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TraH protein; K03201 type IV secretion system protein VirB6
SCNpilot_cont_500_bf_scaffold_2778_28
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20409..20570
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) RepID=Q05HP1_XANOR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ89869.1}; TaxID=291331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85).;"
SCNpilot_cont_500_bf_scaffold_2778_29
Pseudomonas sp. MRSN12121, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22343..23098)
DNA (756bp) protein (252aa)
Plasmid replication protein RepA1 n=1 Tax=Xanthomonas arboricola pv. pruni str. CFBP 5530 RepID=G4U4P2_9XANT
Plasmid, complete sequence {ECO:0000313|EMBL:AJO81918.1}; TaxID=1611770 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MRSN12121.;"
plasmid encoded RepA protein
Displaying 29 items

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