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SCNpilot_cont_500_bf_scaffold_2900

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2900_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(32..730)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NEP9_AFIFE rbh
Chromosome partitioning protein {ECO:0000313|EMBL:KIZ48197.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
partitioning protein, ATPase; K03496 chromosome partitioning protein
SCNpilot_cont_500_bf_scaffold_2900_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1258..1686
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QF91_NITHX
Uncharacterized protein {ECO:0000313|EMBL:KIZ48198.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2900_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1683..3761
DNA (2079bp) protein (693aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DE3629
Uncharacterized protein {ECO:0000313|EMBL:KIZ48199.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2900_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3670..4575)
DNA (906bp) protein (302aa)
proton-translocating NADH-quinone oxidoreductase subunit M; K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase subunit M n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LHJ4_9RHIZ
Oxidoreductase {ECO:0000313|EMBL:KIZ44801.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_500_bf_scaffold_2900_5
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4590..6509)
DNA (1920bp) protein (640aa)
proton-translocating NADH-quinone oxidoreductase subunit L; K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3]
Proton-translocating NADH-quinone oxidoreductase, chain L {ECO:0000313|EMBL:ACB80706.1}; EC=1.6.99.5 {ECO:0000313|EMBL:ACB80706.1};; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
Proton-translocating NADH-quinone oxidoreductase, chain L n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZBB0_METPB
SCNpilot_cont_500_bf_scaffold_2900_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6503..6814)
DNA (312bp) protein (104aa)
NADH-quinone oxidoreductase subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01456};; NADH dehydrogenase I subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; NDH-1 subunit K {ECO:0000256|HAMAP-Rule:MF_01456}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
NADH-ubiquinone oxidoreductase chain 4L; K05576 NAD(P)H-quinone oxidoreductase subunit 4L [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit K n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WUT3_9RHIZ
SCNpilot_cont_500_bf_scaffold_2900_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6811..7764)
DNA (954bp) protein (318aa)
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CJN3_9RHIZ
NADH-ubiquinone oxidoreductase {ECO:0000313|EMBL:KIZ44755.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
SCNpilot_cont_500_bf_scaffold_2900_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7761..8660)
DNA (900bp) protein (300aa)
NADH dehydrogenase (quinone); K00337 NADH-quinone oxidoreductase subunit H [EC:1.6.5.3] rbh
NADH dehydrogenase (Quinone) n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZBA7_METPB rbh
NADH dehydrogenase {ECO:0000313|EMBL:KIZ44756.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_500_bf_scaffold_2900_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8651..9001)
DNA (351bp) protein (117aa)
NADH-quinone oxidoreductase subunit {ECO:0000256|RuleBase:RU003639}; EC=1.6.5.11 {ECO:0000256|RuleBase:RU003639};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 3; K00330 NADH-quinone oxidoreductase subunit A [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LHK0_9RHIZ
SCNpilot_cont_500_bf_scaffold_2900_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9139..9627)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037AB392
Membrane protein containing {ECO:0000313|EMBL:KIZ44803.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2900_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10305..10946)
DNA (642bp) protein (214aa)
Transcriptional regulator, LuxR family n=3 Tax=Oligotropha carboxidovorans RepID=F8BQW8_OLICM
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEI08212.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_2900_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11196..11855
DNA (660bp) protein (220aa)
Transcriptional regulator n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CL63_9RHIZ rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:KIZ44757.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
transcriptional regulator; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_cont_500_bf_scaffold_2900_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11852..12586
DNA (735bp) protein (245aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
integral membrane sensor signal transduction histidine kinase; K02484 two-component system, OmpR family, sensor kinase [EC:2.7.13.3]
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9LHG0_9RHIZ
Displaying 13 items

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