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SCNpilot_cont_500_bf_scaffold_637

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_637_1
unknown

Not on your lists

comp(68..274)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_637_2
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(288..1064)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Pseudomonas syringae pv. aceris str. M302273 RepID=F3JGZ3_PSESX
Uncharacterized protein {ECO:0000313|EMBL:KDP95724.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_3
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1150..3234)
DNA (2085bp) protein (695aa)
Putative ATP-dependent OLD family endonuclease n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7Q4S8_METSZ rbh
ATP-dependent OLD family endonuclease rbh
Putative ATP-dependent OLD family endonuclease {ECO:0000313|EMBL:CCJ07879.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_500_bf_scaffold_637_4
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3312..3659)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FWP1_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:CCG42779.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_5
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3626..4018)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FWP2_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:CCG42780.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_6

Not on your lists

comp(4092..4406)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HPA5_9SPHN
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48488.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4419..4709)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU78_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS63461.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_500_bf_scaffold_637_8

Not on your lists

comp(4696..5919)
DNA (1224bp) protein (408aa)
Conjugal transfer protein TrbI n=1 Tax=Sphingobium lactosutens DS20 RepID=T0ISP3_9SPHN
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48486.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugal transfer protein trbI; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_637_9
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5916..6893)
DNA (978bp) protein (326aa)
P-type conjugative transfer protein TrbG n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FWM2_PHAMO rbh
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:CCG42760.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_500_bf_scaffold_637_10
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6890..7663)
DNA (774bp) protein (258aa)
Type IV secretory pathway, TrbF component n=1 Tax=Caulobacter sp. AP07 RepID=J3A0L8_9CAUL
Type IV secretory pathway, TrbF component {ECO:0000313|EMBL:EJL24479.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_500_bf_scaffold_637_11
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7664..9115)
DNA (1452bp) protein (484aa)
Conjugative transfer protein TrbL n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZG08_9CAUL
Conjugative transfer protein TrbL {ECO:0000313|EMBL:GAD60057.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_637_12
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9122..9847)
DNA (726bp) protein (242aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Caulobacter sp. AP07 RepID=J2PBA9_9CAUL
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:EJL24477.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
conjugal transfer protein TrbJ
SCNpilot_cont_500_bf_scaffold_637_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9844..12282)
DNA (2439bp) protein (813aa)
Type IV secretory pathway, VirB4 component n=1 Tax=Caulobacter sp. AP07 RepID=J2ZYP9_9CAUL
Type IV secretory pathway, VirB4 component {ECO:0000313|EMBL:EJL24476.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
CagE TrbE VirB component of type IV transporter system conserved region; K03199 type IV secretion system protein VirB4
SCNpilot_cont_500_bf_scaffold_637_14
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12276..12539)
DNA (264bp) protein (88aa)
Conjugal transfer protein TrbB n=2 Tax=Brevundimonas diminuta RepID=F4QYV0_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EKY30802.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_637_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12536..12871)
DNA (336bp) protein (112aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJS1_9SPHN
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:BAK67279.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_500_bf_scaffold_637_16

Not on your lists

comp(12885..13859)
DNA (975bp) protein (325aa)
Type II secretion system protein E n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SKT9_RHOPH rbh
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48478.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Type II secretion system protein E; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_cont_500_bf_scaffold_637_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13856..14269)
DNA (414bp) protein (138aa)
CopG family transcriptional regulator n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IL28_9SPHN
CopG family transcriptional regulator {ECO:0000313|EMBL:KFD30081.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
CopG/DNA-binding domain-containing protein
SCNpilot_cont_500_bf_scaffold_637_18
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14278..16305)
DNA (2028bp) protein (676aa)
Conjugal transfer protein traG n=1 Tax=Azospirillum amazonense Y2 RepID=G1XX34_9PROT
Conjugal transfer protein traG {ECO:0000313|EMBL:EGY02168.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
traG; Conjugal transfer protein; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_637_19
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16442..18439)
DNA (1998bp) protein (666aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HPY8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB15122.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_20
unknown

Not on your lists

comp(18489..18713)
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_637_21
unknown

Not on your lists

comp(18710..18868)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_637_22
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

comp(19119..19712)
DNA (594bp) protein (198aa)
Lytic murein transglycosylase n=1 Tax=Variovorax sp. WDL1 RepID=M1JUZ9_9BURK
Lytic transglycosylase {ECO:0000313|EMBL:KIY12835.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
lytic transglycosylase
SCNpilot_cont_500_bf_scaffold_637_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19700..20221)
DNA (522bp) protein (174aa)
Conjugal transfer protein TraF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJT2_9SPHN
conjugal transfer protein TraF
Conjugal transfer protein TraF {ECO:0000313|EMBL:BAK67290.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_500_bf_scaffold_637_24
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20230..20622)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0P7_SPHCR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG50369.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_cont_500_bf_scaffold_637_25
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20769..21086)
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B553CF
Uncharacterized protein {ECO:0000313|EMBL:KGT73190.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_26
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21375..22055
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YKE5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC36798.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_cont_500_bf_scaffold_637_27
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22052..22318
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YKE5_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR05614.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_28
Thalassospira profundimaris, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22636..24450)
DNA (1815bp) protein (605aa)
Partitioning protein n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LN71_9PROT
Partitioning protein {ECO:0000313|EMBL:EKF06382.1}; TaxID=1177928 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira profundimaris WP0211.;"
parB-like partition protein; K03497 chromosome partitioning protein, ParB family
SCNpilot_cont_500_bf_scaffold_637_29
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24450..24839)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Thiobacillus denitrificans RepID=UPI0003645152
Transposase {ECO:0000313|EMBL:AJP47696.1}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_637_30
Mesorhizobium sp. LNJC399B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24836..25756)
DNA (921bp) protein (307aa)
UPI0003CF7593 related cluster n=1 Tax=unknown RepID=UPI0003CF7593
Antirepressor {ECO:0000313|EMBL:ESY06622.1}; TaxID=1287277 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC399B00.;"
hypothetical protein
Displaying items 1-30 of 51 in total

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