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SCNpilot_cont_500_bf_scaffold_753

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_753_1
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63..1067)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8ZJ09_XANCT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU25676.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_753_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1659..2102)
DNA (444bp) protein (148aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=T0GCA5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49928.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_753_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2263..4611
DNA (2349bp) protein (783aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; Flags: Precursor;; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
catalase/peroxidase HPI; K03782 catalase-peroxidase [EC:1.11.1.21] rbh
Catalase-peroxidase n=3 Tax=Sphingomonas sp. LH128 RepID=J8VXS1_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_753_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4791..6026
DNA (1236bp) protein (412aa)
Putative transmembrane protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAS4_9SPHN rbh
Putative transmembrane protein {ECO:0000313|EMBL:EGD58289.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_753_5
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6225..6926
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCP7_SPHWW rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ70063.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_753_6
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6994..7683
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=T0HFU0_9SPHN rbh
Cytochrome B561 {ECO:0000313|EMBL:KEQ55624.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
cytochrome B561 rbh
SCNpilot_cont_500_bf_scaffold_753_7
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7758..8435
DNA (678bp) protein (226aa)
Transcriptional regulator n=2 Tax=Sphingomonadaceae RepID=T0HL22_9SPHN rbh
Transcriptional regulator {ECO:0000313|EMBL:KEQ55623.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
two component transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_753_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8432..9448
DNA (1017bp) protein (339aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Histidine kinase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCP4_SPHWW rbh
histidine kinase rbh
SCNpilot_cont_500_bf_scaffold_753_9
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9513..10622
DNA (1110bp) protein (370aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=T0GC91_9SPHN rbh
Putative heavy metal efflux system protein {ECO:0000313|EMBL:KEQ55621.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
RND family efflux transporter MFP subunit rbh
SCNpilot_cont_500_bf_scaffold_753_10
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10632..13703
DNA (3072bp) protein (1024aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCP2_SPHWW rbh
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ABQ70058.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
CzcA family heavy metal efflux protein; K07239 heavy-metal exporter, HME family rbh
SCNpilot_cont_500_bf_scaffold_753_11
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13696..13995
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=T0HFT2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEQ55619.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_753_12
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13995..15233
DNA (1239bp) protein (413aa)
Transporter n=2 Tax=Sphingomonadaceae RepID=T0HL16_9SPHN rbh
Putative heavy metal efflux system protein {ECO:0000313|EMBL:GAD49941.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
outer membrane efflux protein rbh
SCNpilot_cont_500_bf_scaffold_753_13
Exiguobacterium sp. S17, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15235..16203
DNA (969bp) protein (323aa)
VacJ like lipofamily protein n=1 Tax=Exiguobacterium sp. S17 RepID=S3GGJ2_9BACL
VacJ like lipofamily protein {ECO:0000313|EMBL:EPE61703.1}; TaxID=856854 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. S17.;"
vacJ; surface lipoprotein; K04754 lipoprotein
SCNpilot_cont_500_bf_scaffold_753_14
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16676..17317
DNA (642bp) protein (214aa)
LysR family transcriptional regulator n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S319_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AGH50425.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_753_15
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17341..17649
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCN2_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70048.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_753_16
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17662..17883)
DNA (222bp) protein (74aa)
UPI0003D5DBF8 related cluster n=1 Tax=unknown RepID=UPI0003D5DBF8
Uncharacterized protein {ECO:0000313|EMBL:ETI60518.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_753_17
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17880..19091)
DNA (1212bp) protein (404aa)
Conjugation TrbI family protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VCN0_SPHWW
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugation TrbI family protein {ECO:0000313|EMBL:ABQ70046.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_753_18
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19091..20107)
DNA (1017bp) protein (339aa)
Conjugative transfer protein TrbG n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HA69_9SPHN rbh
Conjugative transfer protein TrbG {ECO:0000313|EMBL:EQB09033.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
conjugal transfer protein TrbG rbh
SCNpilot_cont_500_bf_scaffold_753_19
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20104..20787)
DNA (684bp) protein (228aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJD5_9SPHN
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EZP81832.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_500_bf_scaffold_753_20
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20794..22101)
DNA (1308bp) protein (436aa)
conjugal transfer protein TrbL n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489868
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_500_bf_scaffold_753_21
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22098..22415)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1ND02_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12123.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_753_22
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22428..23150)
DNA (723bp) protein (241aa)
Putative conjugal transfer protein TrbJ n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1ND03_9SPHN
Putative conjugal transfer protein TrbJ {ECO:0000313|EMBL:EAT08737.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
conjugal transfer protein TrbJ
SCNpilot_cont_500_bf_scaffold_753_23
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23147..25597)
DNA (2451bp) protein (817aa)
Conjugal transfer protein TrbE n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GL03_9SPHN rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:EQB04506.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_cont_500_bf_scaffold_753_24
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25594..25863)
DNA (270bp) protein (90aa)
Conjugal transfer protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HYR1_9SPHN
Conjugal transfer protein {ECO:0000313|EMBL:EQB04505.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
type IV secretory pathway TrbD component; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_753_25
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25863..26195)
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1ND06_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EAT08734.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_753_26
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26192..27130)
DNA (939bp) protein (313aa)
UPI0003CFD10B related cluster n=1 Tax=unknown RepID=UPI0003CFD10B rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:ESZ86683.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
conjugal transfer protein TrbB
SCNpilot_cont_500_bf_scaffold_753_27
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27350..27775)
DNA (426bp) protein (142aa)
Ribbon-helix-helix protein, copG family n=1 Tax=Sphingobium sp. AP49 RepID=J2DMP3_9SPHN
Ribbon-helix-helix protein, copG family {ECO:0000313|EMBL:EJK84232.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
helix-turn-helix domain-containing protein
SCNpilot_cont_500_bf_scaffold_753_28
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27785..29758)
DNA (1974bp) protein (658aa)
UPI0003CFF5AC related cluster n=1 Tax=unknown RepID=UPI0003CFF5AC rbh
Conjugal transfer protein TraG {ECO:0000313|EMBL:ESZ86677.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
conjugal transfer coupling protein TraG rbh
SCNpilot_cont_500_bf_scaffold_753_29
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29778..31535)
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A6L2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD50368.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_753_30
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31774..32697)
DNA (924bp) protein (308aa)
Lytic transglycosylase n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HGI8_9SPHN
Putative transglycosylase {ECO:0000313|EMBL:EZP81821.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
lytic transglycosylase subunit
Displaying items 1-30 of 39 in total

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