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SCNpilot_cont_500_bf_scaffold_863

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_863_1
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..455
DNA (453bp) protein (151aa)
GMP synthase, large subunit; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008786}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JU58_HYPDA
SCNpilot_cont_500_bf_scaffold_863_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

747..2003
DNA (1257bp) protein (419aa)
integrase n=1 Tax=Afipia birgiae RepID=UPI0002EFC3FA rbh
CP4-like integrase {ECO:0000313|EMBL:EJU15048.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
CP4-like integrase
SCNpilot_cont_500_bf_scaffold_863_3

Not on your lists

comp(1957..2253)
DNA (297bp) protein (99aa)
transcriptional regulator n=1 Tax=Afipia birgiae RepID=UPI00035FA50D
Uncharacterized protein {ECO:0000313|EMBL:KKN45435.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
prophage CP4-57 regulatory
SCNpilot_cont_500_bf_scaffold_863_4
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2726..3991)
DNA (1266bp) protein (422aa)
UPI0003CE7174 related cluster n=1 Tax=unknown RepID=UPI0003CE7174 rbh
MFS transporter {ECO:0000313|EMBL:ESY71303.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
putative major facilitator family transporter
SCNpilot_cont_500_bf_scaffold_863_5
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3995..4450)
DNA (456bp) protein (152aa)
UPI0003CE9AA2 related cluster n=1 Tax=unknown RepID=UPI0003CE9AA2
Beta-lactamase {ECO:0000313|EMBL:ESY71302.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
metallo-beta-lactamase family protein
SCNpilot_cont_500_bf_scaffold_863_6
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4429..4734)
DNA (306bp) protein (102aa)
UPI0003CE9AA2 related cluster n=1 Tax=unknown RepID=UPI0003CE9AA2
Beta-lactamase {ECO:0000313|EMBL:ESY71302.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
metallo-beta-lactamase family protein
SCNpilot_cont_500_bf_scaffold_863_7
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4805..5473
DNA (669bp) protein (223aa)
UPI0003CF3A6D related cluster n=1 Tax=unknown RepID=UPI0003CF3A6D rbh
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_863_8
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5689..6984
DNA (1296bp) protein (432aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003050EE2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFC63728.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_863_9
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6989..7333
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002F824FD
regulatory protein ArsR
Regulatory protein ArsR {ECO:0000313|EMBL:ABS16037.1}; Flags: Precursor;; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_cont_500_bf_scaffold_863_10
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7330..7743
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003192820
Uncharacterized protein {ECO:0000313|EMBL:KFC63726.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_863_11
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7740..8174
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031DAB22
hypothetical protein; K07112
Msr8615 protein {ECO:0000313|EMBL:BAB49356.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_500_bf_scaffold_863_12
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8171..8947
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FA3434 rbh
hypothetical protein; K07090
Mlr2161 protein {ECO:0000313|EMBL:BAB49358.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_500_bf_scaffold_863_13
unknown

Not on your lists

9007..9144
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_863_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9137..9502
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ML4_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETR79353.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_500_bf_scaffold_863_15
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9647..11080
DNA (1434bp) protein (478aa)
Multicopper oxidase, type 3 n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ML3_MESSB rbh
multicopper oxidase, type 3 rbh
Multicopper oxidase, type 3 {ECO:0000313|EMBL:ABG61356.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_863_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11110..11553
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11ML2_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG61357.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_863_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11577..12194
DNA (618bp) protein (206aa)
Thiol:disulfide interchange protein cycY n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F3P2_9RHIZ
Thiol oxidoreductase DsbE {ECO:0000313|EMBL:ETR79357.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
cycY; cytochrome c-type biogenesis protein CycY (periplasmic thioredoxin)
SCNpilot_cont_500_bf_scaffold_863_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12191..12751
DNA (561bp) protein (187aa)
Putative thioredoxin protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q0G8_RHIE6
Redoxin {ECO:0000313|EMBL:ETR79358.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
thioredoxin protein
SCNpilot_cont_500_bf_scaffold_863_19
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12748..13101
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIN4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV11949.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_863_20
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13107..13796
DNA (690bp) protein (230aa)
Plasmid pSfHH103e complete sequence n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AHK6_RHIFH rbh
Cytochrome C oxidase {ECO:0000313|EMBL:ETR79359.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Protein SCO1 homolog, mitochondrial; K07152 rbh
SCNpilot_cont_500_bf_scaffold_863_21
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14140..14820
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031E6228 rbh
Methyltransferase Sare_0198 {ECO:0000313|EMBL:GAM99001.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
type 12 methyltransferase
SCNpilot_cont_500_bf_scaffold_863_22
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15112..15435)
DNA (324bp) protein (108aa)
Small multidrug resistance protein n=3 Tax=Pseudomonas putida RepID=B1J7X4_PSEPW
small multidrug resistance protein; K03297 small multidrug resistance protein, SMR family
Putative multidrug exporter {ECO:0000313|EMBL:CAC86838.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
SCNpilot_cont_500_bf_scaffold_863_23
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15449..15814)
DNA (366bp) protein (122aa)
Quaternary ammonium transporter n=2 Tax=Pseudomonas putida RepID=U7R5D6_PSEPU
small multidrug resistance protein; K03297 small multidrug resistance protein, SMR family
Putative drug-resistance protein {ECO:0000313|EMBL:ABO21775.1}; TaxID=1196325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (strain DOT-T1E).;"
SCNpilot_cont_500_bf_scaffold_863_24
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15820..16230)
DNA (411bp) protein (137aa)
Cytochrome c biogenesis protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F4T8_ACIC5
Uncharacterized protein {ECO:0000313|EMBL:KHD31869.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
cytochrome c biogenesis protein; K06196 cytochrome c-type biogenesis protein
SCNpilot_cont_500_bf_scaffold_863_25
unknown

Not on your lists

comp(16230..16625)
DNA (396bp) protein (132aa)
hypothetical protein
SCNpilot_cont_500_bf_scaffold_863_26
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(16625..17833)
DNA (1209bp) protein (403aa)
tetrahydromethanopterin S-methyltransferase subunit A; K00577 tetrahydromethanopterin S-methyltransferase subunit A [EC:2.1.1.86] rbh
MtrA family protein n=1 Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F4T6_ACIC5 rbh
MtrA family protein {ECO:0000313|EMBL:ACO31863.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
SCNpilot_cont_500_bf_scaffold_863_27
Bacillus megaterium, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17833..18228)
DNA (396bp) protein (132aa)
Cadmium-binding protein (Cadmium efflux system accessory protein) n=3 Tax=Bacillus megaterium RepID=D5DH12_BACMD
putative transcriptional regulator
Cadmium efflux system accessory protein {ECO:0000313|EMBL:AJI21790.1}; TaxID=1348623 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus megaterium NBRC 15308 = ATCC 14581.;"
SCNpilot_cont_500_bf_scaffold_863_28
unknown

Not on your lists

18741..19058
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_863_29
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19315..19743)
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002D25A31
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ABG61193.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_863_30
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19818..21191
DNA (1374bp) protein (458aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0003182DE4 rbh
coenzyme F390 synthetase-like rbh
Coenzyme F390 synthetase-like protein {ECO:0000313|EMBL:ABG61192.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Displaying items 1-30 of 43 in total

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