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SCNpilot_cont_500_bf_scaffold_988

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_988_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

69..725
DNA (657bp) protein (219aa)
resolvase n=1 Tax=Sphingomonas melonis RepID=UPI0003804E5E rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP54334.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
parA; resolvase protein
SCNpilot_cont_500_bf_scaffold_988_2
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(833..1450)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003747A2A
Uncharacterized protein {ECO:0000313|EMBL:EZP80423.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_988_3
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1476..2309)
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003747A2A
Uncharacterized protein {ECO:0000313|EMBL:EJL28581.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_988_4
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2451..2906
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00035C7C76
Uncharacterized protein {ECO:0000313|EMBL:ETI64677.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_cont_500_bf_scaffold_988_5
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3085..3507)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003762B6B
MarR family transcriptional regulator {ECO:0000313|EMBL:KHA64300.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_988_6
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3617..5044)
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036096F6 rbh
RND transporter {ECO:0000313|EMBL:KFD28054.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
oprN; outer membrane protein OprN
SCNpilot_cont_500_bf_scaffold_988_7
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5044..6570)
DNA (1527bp) protein (509aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036DA7F1
DSBA oxidoreductase {ECO:0000313|EMBL:KFD28053.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_cont_500_bf_scaffold_988_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6570..7838)
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003676F83
Multidrug ABC transporter permease {ECO:0000313|EMBL:KFD28052.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
SCNpilot_cont_500_bf_scaffold_988_9
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7950..8201
DNA (252bp) protein (84aa)
Uncharacterized protein {ECO:0000313|EMBL:KFD28051.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_500_bf_scaffold_988_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8198..8806
DNA (609bp) protein (203aa)
MltA-interacting MipA n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N9K9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFD28051.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
MltA-interacting MipA
SCNpilot_cont_500_bf_scaffold_988_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8803..9030)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GFG3_9SPHN
Putative efflux system protein {ECO:0000313|EMBL:GAO38743.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
RND efflux system outer membrane lipoprotein
SCNpilot_cont_500_bf_scaffold_988_12
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9027..10025)
DNA (999bp) protein (333aa)
RND transporter n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A2D82 rbh
Putative efflux system protein {ECO:0000313|EMBL:GAO38743.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
RND efflux system outer membrane lipoprotein rbh
SCNpilot_cont_500_bf_scaffold_988_13
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10252..11076)
DNA (825bp) protein (275aa)
DSBA oxidoreductase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002894983
Putative multidrug efflux pump membrane protein EmrB {ECO:0000313|EMBL:GAO38744.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
EmrB/QacA family drug resistance transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_cont_500_bf_scaffold_988_14
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11077..11775)
DNA (699bp) protein (233aa)
DSBA oxidoreductase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000379A7FD
Putative multidrug efflux pump membrane protein EmrB {ECO:0000313|EMBL:GAO38744.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
major facilitator superfamily multidrug efflux transporter; K03446 MFS transporter, DHA2 family, multidrug resistance protein B
SCNpilot_cont_500_bf_scaffold_988_15
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11772..12461)
DNA (690bp) protein (230aa)
secretion protein HlyD n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000365C3E0 rbh
Putative multidrug efflux pump membrane fusion protein EmrA {ECO:0000313|EMBL:GAO38745.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
SCNpilot_cont_500_bf_scaffold_988_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12445..12831)
DNA (387bp) protein (129aa)
secretion protein HlyD n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287E59A
Putative multidrug efflux pump membrane fusion protein EmrA {ECO:0000313|EMBL:GAO38745.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A
SCNpilot_cont_500_bf_scaffold_988_17
Rhodococcus wratislaviensis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13366..15168)
DNA (1803bp) protein (601aa)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI0003652AAF rbh
Uncharacterized protein {ECO:0000313|EMBL:ELB90919.1}; TaxID=1195242 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis IFP 2016.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_988_18
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15165..16364)
DNA (1200bp) protein (400aa)
formyl-CoA transferase (EC:2.8.3.16); K07749 formyl-CoA transferase [EC:2.8.3.16] rbh
Probable formyl-CoA transferase {ECO:0000313|EMBL:ABG92598.1}; EC=2.8.3.16 {ECO:0000313|EMBL:ABG92598.1};; TaxID=101510 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI000374FC77 rbh
SCNpilot_cont_500_bf_scaffold_988_19
Sphingopyxis macrogoltabida, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16378..19263)
DNA (2886bp) protein (962aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B49773 rbh
FumJ {ECO:0000313|EMBL:ACS27062.1}; TaxID=33050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis macrogoltabida (Sphingomonas macrogoltabidus).;"
TonB-dependent receptor-like protein
SCNpilot_cont_500_bf_scaffold_988_20
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19306..20637)
DNA (1332bp) protein (444aa)
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VFJ2_CAUST
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADG09724.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_500_bf_scaffold_988_21
Rhodococcus sp. JVH1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20766..21275
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhodococcus sp. JVH1 RepID=J2JLP4_9NOCA
Uncharacterized protein {ECO:0000313|EMBL:EJJ01248.1}; TaxID=745408 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. JVH1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_988_22
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21275..21676
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Rhodococcus sp. (strain RHA1) RepID=Q0SIP0_RHOSR
hypothetical protein; K09709 mesaconyl-C4 CoA hydratase
Uncharacterized protein {ECO:0000313|EMBL:ABG92596.1}; TaxID=101510 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (strain RHA1).;"
SCNpilot_cont_500_bf_scaffold_988_23
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22017..23180
DNA (1164bp) protein (388aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
hypothetical protein n=1 Tax=Actinomadura atramentaria RepID=UPI00036328B1 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETX04743.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
SCNpilot_cont_500_bf_scaffold_988_24
Hyphomonas chukchiensis, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23301..24038
DNA (738bp) protein (246aa)
IclR family transcriptional regulator n=1 Tax=Ponticaulis koreensis RepID=UPI0003B66459
Uncharacterized protein {ECO:0000313|EMBL:KCZ58709.1}; TaxID=1280947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas chukchiensis.;"
IclR-family regulatory protein
SCNpilot_cont_500_bf_scaffold_988_25
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24626..25228)
DNA (603bp) protein (201aa)
Plasmid pRiA4b ORF-3-like family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WTD8_9SPHN rbh
Plasmid pRiA4b ORF-3-like family protein {ECO:0000313|EMBL:KEQ54985.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
plasmid pRiA4b ORF-3 family protein
SCNpilot_cont_500_bf_scaffold_988_26
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25225..26769)
DNA (1545bp) protein (515aa)
Transposase IS66 family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3P3_9SPHN rbh
Transposase IS66 family protein {ECO:0000313|EMBL:KEQ54984.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
putative transposase for insertion sequence element rbh
SCNpilot_cont_500_bf_scaffold_988_27
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26831..27178)
DNA (348bp) protein (116aa)
isocitrate lyase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B419BA
IS66 Orf2 like family protein {ECO:0000313|EMBL:KEQ54991.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
IS66 Orf2 family protein; K07484 transposase
SCNpilot_cont_500_bf_scaffold_988_28
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27175..27549)
DNA (375bp) protein (125aa)
Transposase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X3P1_9SPHN
Transposase family protein {ECO:0000313|EMBL:KEQ54992.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_988_29
unknown

Not on your lists

27562..27678
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_988_30
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27681..27779)
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J2I5_9SPHN
Transposase {ECO:0000313|EMBL:EQB30275.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Displaying items 1-30 of 40 in total

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