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SCNpilot_cont_500_bf_scaffold_17515

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_17515_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1090
DNA (1089bp) protein (363aa)
P-type conjugative transfer protein TrbL n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XRJ0_DELAC
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EPD42104.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_17515_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1109..1813
DNA (705bp) protein (235aa)
Type IV secretion system protein VirB5 n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WQP7_DELAC rbh
Type IV secretion system protein VirB5 {ECO:0000313|EMBL:EPD42103.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
conjugal transfer protein Trbf; K03200 type IV secretion system protein VirB5
SCNpilot_cont_500_bf_scaffold_17515_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1810..2790
DNA (981bp) protein (327aa)
P-type conjugative transfer protein TrbG n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV26_ALIDB
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIL06320.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
p-type conjugative transfer protein trbg; K03204 type IV secretion system protein VirB9
SCNpilot_cont_500_bf_scaffold_17515_4
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2793..3023
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa str. Stone 130 RepID=N2BTZ5_PSEAI
Conjugative transfer protein TrbI {ECO:0000313|EMBL:AIJ47384.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_17515_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2972..3955
DNA (984bp) protein (328aa)
Conjugation TrbI family protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WYQ2_COMTE
Conjugation TrbI family protein {ECO:0000313|EMBL:EED68013.1}; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_17515_6
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3952..4227
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Comamonadaceae RepID=A9BTR3_DELAS
hypothetical protein
Conjugal transfer protein {ECO:0000313|EMBL:AIJ46188.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
SCNpilot_cont_500_bf_scaffold_17515_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4344..4694)
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Comamonadaceae RepID=A9BTR2_DELAS
hypothetical protein; K09796 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ46189.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
SCNpilot_cont_500_bf_scaffold_17515_8
Enterobacter sp. 35027, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5465..6073
DNA (609bp) protein (203aa)
Transcriptional regulator, TetR family n=5 Tax=Proteobacteria RepID=A1U021_MARAV rbh
TetR family transcriptional regulator rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KJN97006.1}; TaxID=1619239 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter.;" source="Enterobacter sp. 35027.;"
SCNpilot_cont_500_bf_scaffold_17515_9
Shewanella putrefaciens, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6070..6372
DNA (303bp) protein (101aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Shewanella putrefaciens (strain 200) RepID=E6XG51_SHEP2
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADV56189.1}; TaxID=399804 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella putrefaciens (strain 200).;"
SCNpilot_cont_500_bf_scaffold_17515_10
Aeromonas media, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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6353..7222
DNA (870bp) protein (290aa)
RND family efflux transporter MFP subunit n=1 Tax=Aeromonas media WS RepID=K2I6B6_AERME rbh
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:AHX60099.1}; TaxID=1208104 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas media WS.;"
RND family efflux transporter MFP subunit rbh
SCNpilot_cont_500_bf_scaffold_17515_11

Not on your lists

7219..7764
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DI00_9BACT
hypothetical protein; K02004 putative ABC transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:EKD97031.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying 11 items

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