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SCNpilot_cont_500_bf_scaffold_12359

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_12359_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3..239
DNA (237bp) protein (79aa)
TraJ protein n=2 Tax=Escherichia coli RepID=I2YBJ5_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KIO48702.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TraJ protein
SCNpilot_cont_500_bf_scaffold_12359_2
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

236..1831
DNA (1596bp) protein (532aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ACY9_NITEC rbh
relaxase/mobilization nuclease family protein rbh
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:ABI60782.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
SCNpilot_cont_500_bf_scaffold_12359_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1828..2817
DNA (990bp) protein (330aa)
Putative uncharacterized protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SDM8_CITFR
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48703.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_12359_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2766..3683
DNA (918bp) protein (306aa)
Conjugal transfer coupling protein TraG n=1 Tax=Ralstonia solanacearum SD54 RepID=V5AHV6_RALSL
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48703.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_12359_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3680..4195
DNA (516bp) protein (172aa)
Type IV secretory pathway protease n=1 Tax=Ralstonia solanacearum SD54 RepID=V5A224_RALSL
Conjugal transfer protein TraF {ECO:0000313|EMBL:KIO48704.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Type IV secretory pathway protease TraF-like
SCNpilot_cont_500_bf_scaffold_12359_6
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4192..4710
DNA (519bp) protein (173aa)
Lytic transglycosylase, catalytic n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J2HUF1_KLEPN
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:CDG90691.1}; TaxID=1397852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Florida.;"
lytic transglycosylase, catalytic; K03194 type IV secretion system protein VirB1
SCNpilot_cont_500_bf_scaffold_12359_7
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4752..6038)
DNA (1287bp) protein (429aa)
Conjugal transfer protein TrbI n=2 Tax=Proteobacteria RepID=V5CHL3_RALSL
Conjugation TrbI family protein {ECO:0000313|EMBL:CDG90682.1}; TaxID=1397852 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Florida.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_12359_8
unknown

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comp(6035..6418)
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_12359_9
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6415..7338)
DNA (924bp) protein (308aa)
Putative mating pair formation protein n=2 Tax=Ralstonia solanacearum RepID=V5AS01_RALSL rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48705.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_500_bf_scaffold_12359_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7320..7880)
DNA (561bp) protein (187aa)
conjugal transfer protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002376FBC
Conjugal transfer protein {ECO:0000313|EMBL:KIO48643.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer protein; K03200 type IV secretion system protein VirB5
SCNpilot_cont_500_bf_scaffold_12359_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7914..9137)
DNA (1224bp) protein (408aa)
P-type conjugative transfer protein TrbL n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SDQ4_CITFR
Uncharacterized protein {ECO:0000313|EMBL:KIO48644.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
trbL; P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_12359_12
unknown

Not on your lists

comp(9417..9617)
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_12359_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9619..10218)
DNA (600bp) protein (200aa)
P-type conjugative transfer protein TrbJ n=3 Tax=Escherichia coli RepID=I2YAD0_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KIO48646.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
trbJ; P-type conjugative transfer protein TrbJ
Displaying 13 items

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