ggKbase home page

SCNpilot_cont_500_bf_scaffold_1396

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1396_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(538..2697)
DNA (2160bp) protein (720aa)
Trag protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK53_OLICO rbh
Type IV secretion protein VirD4 {ECO:0000313|EMBL:AEI08307.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
virD4; type IV secretion protein VirD4; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_cont_500_bf_scaffold_1396_2
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2675..3748)
DNA (1074bp) protein (358aa)
P-type DNA transfer ATPase VirB11 n=2 Tax=Oligotropha carboxidovorans RepID=B6JK52_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig146, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53308.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
virB; P-type DNA transfer ATPase VirB11; K03196 type IV secretion system protein VirB11
SCNpilot_cont_500_bf_scaffold_1396_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3711..5054)
DNA (1344bp) protein (448aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK51_OLICO
Conjugal transfer protein {ECO:0000313|EMBL:KIZ46690.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
virB10; type IV secretion protein VirB10; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_1396_4
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5060..5863)
DNA (804bp) protein (268aa)
Conjugal transfer protein TrbG/VirB9/CagX n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFH4_NITHX
conjugal transfer protein TrbG/VirB9/CagX; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG/VirB9/CagX {ECO:0000313|EMBL:ABE65023.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1396_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5860..6576)
DNA (717bp) protein (239aa)
Type IV secretion protein VirB8 n=2 Tax=Oligotropha carboxidovorans RepID=B6JK49_OLICO
virB8; type IV secretion protein VirB8; K03203 type IV secretion system protein VirB8
Type IV secretion protein VirB8 {ECO:0000313|EMBL:AEI08311.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1396_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6573..7703)
DNA (1131bp) protein (377aa)
TrbL/VirB6 plasmid conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK48_OLICO
virB6; type IV secretion protein VirB6; K03201 type IV secretion system protein VirB6
Type IV secretion protein VirB6 {ECO:0000313|EMBL:AEI08312.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1396_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7713..7907)
DNA (195bp) protein (65aa)
Putative lipoprotein n=1 Tax=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) RepID=B6JK47_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig150, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53115.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
lipoprotein
SCNpilot_cont_500_bf_scaffold_1396_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8118..8831)
DNA (714bp) protein (238aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK45_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08313.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1396_9
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8842..9690)
DNA (849bp) protein (283aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK44_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig132, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53812.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9687..12098)
DNA (2412bp) protein (804aa)
Type IV secretion protein VirB4 n=2 Tax=Oligotropha carboxidovorans RepID=B6JK43_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig132, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53813.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
type IV secretion/conjugal transfer ATPase; K03199 type IV secretion system protein VirB4
SCNpilot_cont_500_bf_scaffold_1396_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12109..12405)
DNA (297bp) protein (99aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JK42_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig132, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53814.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
virB3; type IV secretion protein VirB3; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_1396_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12402..12707)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8N8F8_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS26852.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
conjugal transfer protein, trbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_1396_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12721..13449)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKX6_AFIFE
Bradyrhizobium elkanii strain UASWS1015 Contig132, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53816.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative lytic transglycosylase
SCNpilot_cont_500_bf_scaffold_1396_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13552..14049
DNA (498bp) protein (166aa)
Uncharacterized protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BR75_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI08319.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_500_bf_scaffold_1396_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14051..14677
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NRJ2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32992.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
succinoglycan biosynthesis protein exoI-like
SCNpilot_cont_500_bf_scaffold_1396_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14687..15022
DNA (336bp) protein (112aa)
Single-stranded DNA-binding protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8ND73_AFIFE
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative single-stranded DNA-binding protein
SCNpilot_cont_500_bf_scaffold_1396_17
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15009..15590
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8N8G2_AFIFE
Bradyrhizobium elkanii strain UASWS1015 Contig150, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53119.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative nuclease
SCNpilot_cont_500_bf_scaffold_1396_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15671..16141
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKY1_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS26858.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16154..16795
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3H1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32988.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16839..17321
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00037BDF3F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE65039.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1396_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17318..18010
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000305F0A0 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE65040.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_1396_22
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18016..18261)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8NZX5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ETR79416.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_23
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18294..18917)
DNA (624bp) protein (208aa)
Autoinducer synthase n=2 Tax=Oligotropha carboxidovorans RepID=B6JK74_OLICO
Bradyrhizobium elkanii strain UASWS1015 Contig144, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53396.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
autoinducer synthase
SCNpilot_cont_500_bf_scaffold_1396_24
unknown

Not on your lists

comp(19434..19886)
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1396_25
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19934..20389)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NER0_AFIFE
Bradyrhizobium elkanii strain UASWS1015 Contig129, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53904.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
RES domain-containing protein
SCNpilot_cont_500_bf_scaffold_1396_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20557..21231)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NH47_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS26865.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21314..21622)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8ND83_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS26866.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_28
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22396..22650
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFE6_NITHX
Bradyrhizobium elkanii strain UASWS1015 Contig148, whole genome shotgun sequence {ECO:0000313|EMBL:KIU53227.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22650..22871
DNA (222bp) protein (74aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I1G4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK53184.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1396_30
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23540..23776
DNA (237bp) protein (79aa)
Copper chaperone n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QSX2_9BRAD
Copper chaperone {ECO:0000313|EMBL:EIG62878.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
Displaying items 1-30 of 39 in total

View Taxonomy