ggKbase home page

SCNpilot_cont_500_bf_scaffold_1522

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1522_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..128
DNA (126bp) protein (42aa)
DNA repair protein RadC n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESV6_BRASB
DNA repair protein RadC {ECO:0000313|EMBL:CDX24444.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
radC; DNA repair protein RadC; K03630 DNA repair protein RadC
SCNpilot_cont_500_bf_scaffold_1522_2
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

285..1526
DNA (1242bp) protein (414aa)
Integrase family protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV31_CAUSK rbh
integrase family protein rbh
Integrase family protein {ECO:0000313|EMBL:ABZ72921.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_500_bf_scaffold_1522_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1523..2902
DNA (1380bp) protein (460aa)
Blr8175 protein n=2 Tax=Bradyrhizobium RepID=Q89BH7_BRADU
Uncharacterized protein {ECO:0000313|EMBL:CEG10609.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1522_4
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2956..4101
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003611838 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJN03515.1}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1522_5
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4125..5288
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGW6_NITHX rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG10606.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1522_6
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5291..5944
DNA (654bp) protein (218aa)
Succinoglycan biosynthesis protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S646_9SPHN
succinoglycan biosynthesis protein
Succinoglycan biosynthesis protein {ECO:0000313|EMBL:AGH51500.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_1522_7
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6003..7910)
DNA (1908bp) protein (636aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
pathogenesis-like protein; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12] rbh
DNA/RNA helicase, superfamily I n=1 Tax=Phyllobacterium sp. YR531 RepID=J3CDK6_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_1522_8
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7907..10294)
DNA (2388bp) protein (796aa)
DNA helicase n=1 Tax=Hoeflea sp. 108 RepID=UPI0003785B2A rbh
Putative ATP-dependent endonuclease of the OLD family {ECO:0000313|EMBL:CDX18245.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1522_9
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10432..10899)
DNA (468bp) protein (156aa)
UPI0003D5EAA4 related cluster n=1 Tax=unknown RepID=UPI0003D5EAA4
Uncharacterized protein {ECO:0000313|EMBL:ETI63511.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1522_10
unknown

Not on your lists

comp(10911..11153)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1522_11
Mycobacterium avium, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11146..13200)
DNA (2055bp) protein (685aa)
Type III restriction protein res subunit n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZTH8_DESOH rbh
Helicase conserved C-terminal domain protein {ECO:0000313|EMBL:EUA41955.1}; TaxID=1299330 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium avium subsp. avium 2285 (R).;"
type III restriction protein res subunit rbh
SCNpilot_cont_500_bf_scaffold_1522_12
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14005..15525
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QIR3_BREDI rbh
Nucleotidyltransferase {ECO:0000313|EMBL:KEQ52189.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
putative nucleotidyltransferase; K14161 protein ImuB rbh
SCNpilot_cont_500_bf_scaffold_1522_13
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15522..17126
DNA (1605bp) protein (535aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
dnaE; DNA polymerase III alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QHS3_BREDI
SCNpilot_cont_500_bf_scaffold_1522_14
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17123..18565
DNA (1443bp) protein (481aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
dnaE; DNA polymerase III alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QHS3_BREDI
SCNpilot_cont_500_bf_scaffold_1522_15
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18591..19670
DNA (1080bp) protein (360aa)
Transposase n=1 Tax=Asticcacaulis sp. AC466 RepID=V4NWG5_9CAUL rbh
Transposase {ECO:0000313|EMBL:EXS68061.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
putative transposase for insertion sequence element rbh
SCNpilot_cont_500_bf_scaffold_1522_16
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19745..19996
DNA (252bp) protein (84aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
dnaE; DNA polymerase III alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7]
Error-prone DNA polymerase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QHS3_BREDI
SCNpilot_cont_500_bf_scaffold_1522_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20170..21720
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HSK3_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL26907.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1522_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21781..22371)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI0002E24B2C rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGS26596.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_500_bf_scaffold_1522_19
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22642..23841)
DNA (1200bp) protein (400aa)
Putative chromate transport protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMV4_9SPHN rbh
Putative chromate transport protein {ECO:0000313|EMBL:EJU14087.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
putative chromate transport protein; K07240 chromate transporter rbh
SCNpilot_cont_500_bf_scaffold_1522_20
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23908..24576)
DNA (669bp) protein (223aa)
NADPH-dependent FMN reductase n=1 Tax=Kaistia granuli RepID=UPI0003785404
NADPH-dependent FMN reductase; K11811 arsenical resistance protein ArsH
NADPH-dependent FMN reductase {ECO:0000313|EMBL:ABP70300.1}; Flags: Precursor;; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_cont_500_bf_scaffold_1522_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24576..25526)
DNA (951bp) protein (317aa)
arsenic transporter n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F73C
Arsenical-resistance protein {ECO:0000313|EMBL:CDN94495.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
arsB2; arsenical-resistance protein; K03325 arsenite transporter, ACR3 family
SCNpilot_cont_500_bf_scaffold_1522_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25536..25961)
DNA (426bp) protein (142aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
arsC; arsenate reductase (EC:1.20.4.1); K00537 arsenate reductase [EC:1.20.4.1]
arsenate reductase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F73B
SCNpilot_cont_500_bf_scaffold_1522_23
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25970..26497)
DNA (528bp) protein (176aa)
ArsR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F73A rbh
Uncharacterized protein {ECO:0000313|EMBL:CDN94493.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
protein-tyrosine-phosphatase rbh
SCNpilot_cont_500_bf_scaffold_1522_24
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26490..26861)
DNA (372bp) protein (124aa)
ArsR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F739
ArsR family transcriptional regulator {ECO:0000313|EMBL:CDN94492.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ArsR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_1522_25
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27067..28488
DNA (1422bp) protein (474aa)
transposase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F735 rbh
Tiorf70 protein {ECO:0000313|EMBL:CDN94490.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
transposase IS4 family protein
SCNpilot_cont_500_bf_scaffold_1522_26
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28658..29854
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003628CEB
Uncharacterized protein {ECO:0000313|EMBL:KEZ18644.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_1522_27
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30027..32141
DNA (2115bp) protein (705aa)
UPI0003D6575A related cluster n=1 Tax=unknown RepID=UPI0003D6575A
DNA-binding protein {ECO:0000313|EMBL:KHJ55192.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
ParB-like protein; K03497 chromosome partitioning protein, ParB family rbh
SCNpilot_cont_500_bf_scaffold_1522_28
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32200..32421
DNA (222bp) protein (74aa)
Uncharacterized protein n=3 Tax=Sphingobium RepID=D4Z978_SPHJU
Uncharacterized protein {ECO:0000313|EMBL:KEZ18642.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1522_29
bacterium YEK0313, Bacteria

Not on your lists

32493..32906
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VNU0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:CEJ11267.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1522_30
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32903..33139
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESX9_BRASB
Uncharacterized protein {ECO:0000313|EMBL:KHJ55189.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
Displaying items 1-30 of 43 in total

View Taxonomy