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SCNpilot_cont_500_bf_scaffold_1744

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1744_1
unknown

Not on your lists

379..534
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1744_2
Paracoccus marcusii, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(536..1375)
DNA (840bp) protein (280aa)
integrase n=1 Tax=Aureimonas ureilytica RepID=UPI000363D3BC rbh
Putative uncharacterized protein {ECO:0000313|EMBL:ADI24228.1}; TaxID=59779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus marcusii.;"
transposase rbh
SCNpilot_cont_500_bf_scaffold_1744_3
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1426..1704)
DNA (279bp) protein (93aa)
transposase IS3 n=1 Tax=Aureimonas ureilytica RepID=UPI00037DF480
transposase
Transposase {ECO:0000313|EMBL:BAF87930.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_cont_500_bf_scaffold_1744_4
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1895..3136)
DNA (1242bp) protein (414aa)
FAD dependent oxidoreductase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
UPI0003CF3731 related cluster n=1 Tax=unknown RepID=UPI0003CF3731 rbh
FAD-dependent oxidoreductase {ECO:0000313|EMBL:ESY52285.1}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
SCNpilot_cont_500_bf_scaffold_1744_5
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3133..4593)
DNA (1461bp) protein (487aa)
FAD linked oxidase domain protein n=1 Tax=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) RepID=F2N5I2_PSEU6
Uncharacterized protein {ECO:0000313|EMBL:KJR61571.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
FAD linked oxidase domain-containing protein
SCNpilot_cont_500_bf_scaffold_1744_6
bacterium YEK0313, Bacteria

Not on your lists

comp(4614..5936)
DNA (1323bp) protein (441aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137Z1_RHOPS
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000313|EMBL:CEJ13572.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_1744_7
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

6116..7621
DNA (1506bp) protein (502aa)
Transcriptional regulator, GntR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZR3_RUBXD
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABG03115.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
SCNpilot_cont_500_bf_scaffold_1744_8
Roseobacter sp. MED193, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7848..8768
DNA (921bp) protein (307aa)
Peptide ABC transporter, permease protein n=1 Tax=Roseobacter sp. MED193 RepID=A3X5F1_9RHOB
Peptide ABC transporter, permease protein {ECO:0000313|EMBL:EAQ47381.1}; TaxID=314262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter sp. MED193.;"
binding-protein-dependent transporter inner membrane component family protein 42; K02033 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_1744_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8765..9673
DNA (909bp) protein (303aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I1W6_9RHIZ
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHK53011.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein
SCNpilot_cont_500_bf_scaffold_1744_10
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9673..10503
DNA (831bp) protein (277aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000372639C
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGM31836.1}; Flags: Fragment;; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
peptide ABC transporter ATP-binding protein
SCNpilot_cont_500_bf_scaffold_1744_11
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10500..11345
DNA (846bp) protein (282aa)
ABC transporter ATP-binding protein n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6KK07_STRRC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KJE50882.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
ABC transporter-like protein
SCNpilot_cont_500_bf_scaffold_1744_12
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11347..12864
DNA (1518bp) protein (506aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Ralstonia solanacearum RepID=D8N0C2_RALSL
ABC transporter substrate-binding protein
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:CBJ35070.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
SCNpilot_cont_500_bf_scaffold_1744_13
Pandoraea pulmonicola, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12938..14257
DNA (1320bp) protein (440aa)
peptidase M38 n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037E0678
Peptidase M38 {ECO:0000313|EMBL:AJC19769.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
amidohydrolase
SCNpilot_cont_500_bf_scaffold_1744_14
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14327..16363)
DNA (2037bp) protein (679aa)
Uncharacterized protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YLD1_MOBAS rbh
Uncharacterized protein {ECO:0000313|EMBL:EAS51800.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1744_15
unknown

Not on your lists

comp(16380..16667)
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1744_16
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16667..18217)
DNA (1551bp) protein (517aa)
Gamma-glutamyltransferase {ECO:0000313|EMBL:EFH09536.1}; EC=2.3.2.2 {ECO:0000313|EMBL:EFH09536.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
putative acylase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] rbh
Gamma-glutamyltransferase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RT34_9PROT rbh
SCNpilot_cont_500_bf_scaffold_1744_17
Ralstonia solanacearum, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18351..19868)
DNA (1518bp) protein (506aa)
Extracellular solute-binding protein, family 5 n=1 Tax=Ralstonia solanacearum RepID=D8N0C2_RALSL
ABC transporter substrate-binding protein
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:CBJ35070.1}; TaxID=305 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia solanacearum (Pseudomonas solanacearum).;"
SCNpilot_cont_500_bf_scaffold_1744_18
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20054..22057)
DNA (2004bp) protein (668aa)
Chemoreceptor McpA n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X5Z4_RHIFR
Putative methyl-accepting chemotaxis protein MCP {ECO:0000313|EMBL:KFC70966.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
mcpA8; chemoreceptor McpA
SCNpilot_cont_500_bf_scaffold_1744_19
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22281..23348)
DNA (1068bp) protein (356aa)
nitroreductase family protein (EC:1.6.6.-)
Nitroreductase n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=F2ZL94_9PSED
NADH dehydrogenase {ECO:0000313|EMBL:KJC56927.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_500_bf_scaffold_1744_20
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23432..24460)
DNA (1029bp) protein (343aa)
UPI0003CF08B3 related cluster n=2 Tax=unknown RepID=UPI0003CF08B3
Uncharacterized protein {ECO:0000313|EMBL:ESY85093.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
Tat pathway signal sequence domain-containing protein 25
SCNpilot_cont_500_bf_scaffold_1744_21
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24874..25902)
DNA (1029bp) protein (343aa)
UPI0003CF08B3 related cluster n=2 Tax=unknown RepID=UPI0003CF08B3
Uncharacterized protein {ECO:0000313|EMBL:ESY85093.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
Tat pathway signal sequence domain-containing protein 25
SCNpilot_cont_500_bf_scaffold_1744_22
Haematobacter massiliensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25969..27303)
DNA (1335bp) protein (445aa)
monooxygenase n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00036D5800
Monooxygenase {ECO:0000313|EMBL:KFI28368.1}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
NtaA/SnaA/SoxA family monooxygenase
SCNpilot_cont_500_bf_scaffold_1744_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27343..27774)
DNA (432bp) protein (144aa)
4-oxalocrotonate tautomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215U6_RHOPB
4-oxalocrotonate tautomerase
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:ABD87840.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_500_bf_scaffold_1744_24
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(27821..28606)
DNA (786bp) protein (262aa)
UPI0003CE434A related cluster n=1 Tax=unknown RepID=UPI0003CE434A
binding-protein-dependent transporter inner membrane component family protein 62; K02053 putative spermidine/putrescine transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCNpilot_cont_500_bf_scaffold_1744_25
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28603..29487)
DNA (885bp) protein (295aa)
UPI0003CEF3A5 related cluster n=1 Tax=unknown RepID=UPI0003CEF3A5
ABC transporter permease {ECO:0000313|EMBL:ESY84731.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
binding-protein-dependent transporter inner membrane component family protein 61
SCNpilot_cont_500_bf_scaffold_1744_26
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29505..30533)
DNA (1029bp) protein (343aa)
UPI0003CF08B3 related cluster n=2 Tax=unknown RepID=UPI0003CF08B3
Uncharacterized protein {ECO:0000313|EMBL:ESY85093.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
Tat pathway signal sequence domain-containing protein 25
SCNpilot_cont_500_bf_scaffold_1744_27
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30570..31535)
DNA (966bp) protein (322aa)
ABC transporter (EC:3.6.3.-)
UPI0003CEF9DF related cluster n=1 Tax=unknown RepID=UPI0003CEF9DF rbh
Spermidine/putrescine ABC transporter ATPase {ECO:0000313|EMBL:ESY84730.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCNpilot_cont_500_bf_scaffold_1744_28
unknown

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comp(31865..32404)
DNA (540bp) protein (180aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_1744_29
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(32482..34140)
DNA (1659bp) protein (553aa)
Putative periplasmic protein n=1 Tax=Pseudomonas putida S16 RepID=F8G4W6_PSEPU rbh
putative periplasmic protein; K07047 rbh
Exoenzymes regulatory protein AepA {ECO:0000313|EMBL:AHZ77151.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
SCNpilot_cont_500_bf_scaffold_1744_30

Not on your lists

comp(34422..35435)
DNA (1014bp) protein (338aa)
glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8); K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8]
Putative aminotransferase class-III n=1 Tax=uncultured marine microorganism HF4000_APKG8L7 RepID=B3TB76_9ZZZZ
Putative aminotransferase class-III {ECO:0000313|EMBL:ABZ09835.1}; TaxID=455556 species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_APKG8L7.;"
Displaying 30 items

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