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SCNpilot_cont_500_bf_scaffold_3026

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3026_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..2824
DNA (2823bp) protein (941aa)
Putative heavy metal cation efflux system protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N1C7_RHOPA rbh
czcA3; heavy metal cation efflux system protein; K07239 heavy-metal exporter, HME family rbh
Putative heavy metal cation efflux system protein {ECO:0000313|EMBL:CAE29920.1}; Flags: Precursor;; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_500_bf_scaffold_3026_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2821..3135
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130T5_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41404.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_500_bf_scaffold_3026_3
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3132..4562
DNA (1431bp) protein (477aa)
Outer membrane protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B9P9_9RHIZ
outer membrane protein
Outer membrane protein {ECO:0000313|EMBL:AGK59748.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_cont_500_bf_scaffold_3026_4
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5178..5900
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037D7E22
LysR family transcriptional regulator {ECO:0000313|EMBL:KKC25992.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_3026_5
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6044..7042
DNA (999bp) protein (333aa)
Conjugal transfer protein trbB n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FXX1_PHAMO rbh
Conjugal transfer protein trbB {ECO:0000313|EMBL:CCG43209.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
trbB; conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_500_bf_scaffold_3026_6
Thioclava pacifica, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7039..7371
DNA (333bp) protein (111aa)
conjugal transfer protein TrbC n=1 Tax=Sphingobium xenophagum RepID=UPI000381F4E4
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KEO55012.1}; TaxID=1353537 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava pacifica DSM 10166.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_3026_7
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7371..7640
DNA (270bp) protein (90aa)
Conjugal transfer protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BK5_MESSB
conjugal transfer protein; K03198 type IV secretion system protein VirB3
Conjugal transfer protein {ECO:0000313|EMBL:ABG65220.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_500_bf_scaffold_3026_8
Mesorhizobium sp. LSHC414A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7651..10137
DNA (2487bp) protein (829aa)
UPI0003CE0F92 related cluster n=1 Tax=unknown RepID=UPI0003CE0F92 rbh
Conjugal transfer protein TrbE {ECO:0000313|EMBL:ESX79390.1}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC414A00.;"
trbE; conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_cont_500_bf_scaffold_3026_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10134..10889
DNA (756bp) protein (252aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJC8_XANP2
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:ETR77824.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
conjugal transfer protein TrbJ
SCNpilot_cont_500_bf_scaffold_3026_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10886..11296
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JD9_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07945.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_3026_11
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11296..12645
DNA (1350bp) protein (450aa)
Putative conjugal transfer protein trbL n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ETU4_BRASB
Conjugal transfer protein TrbL {ECO:0000313|EMBL:KKC25928.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_3026_12
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12642..13334
DNA (693bp) protein (231aa)
UPI0003CF1D4B related cluster n=1 Tax=unknown RepID=UPI0003CF1D4B
Conjugal transfer protein TrbF {ECO:0000313|EMBL:ESY62548.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
type IV secretory pathway, TrbF component
SCNpilot_cont_500_bf_scaffold_3026_13
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13331..14377
DNA (1047bp) protein (349aa)
TrbG protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89B85_BRADU
trbG; conjugal transfer protein; K03204 type IV secretion system protein VirB9
Conjugal transfer protein {ECO:0000313|EMBL:BAR58876.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
SCNpilot_cont_500_bf_scaffold_3026_14
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14374..15570
DNA (1197bp) protein (399aa)
Conjugation TrbI family protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ESV6_METSB rbh
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10 rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:ACK50441.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_500_bf_scaffold_3026_15
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15567..15794
DNA (228bp) protein (76aa)
Uncharacterized conserved small protein n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KEI2_MESAW
uncharacterized conserved small protein
Uncharacterized conserved small protein {ECO:0000313|EMBL:AGB43416.1}; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_cont_500_bf_scaffold_3026_16
Salinisphaera hydrothermalis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15969..16634)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00036DD7A0
Putative alpha/beta hydrolase superfamily protein {ECO:0000313|EMBL:KEZ76658.1}; TaxID=1304275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera hydrothermalis C41B8.;"
putative alpha/beta hydrolase superfamily, alr3514-like protein
Displaying 16 items

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