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SCNpilot_cont_500_bf_scaffold_3236

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3236_1
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28..684)
DNA (657bp) protein (219aa)
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JPY3_AGRRK rbh
amino acid ABC transporter permease; K10037 glutamine transport system permease protein rbh
Glutamine ABC transporter permease {ECO:0000313|EMBL:KEA03255.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_cont_500_bf_scaffold_3236_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(719..1462)
DNA (744bp) protein (248aa)
ABC-type amino acid transport system periplasmic component n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ADK0_RHIRD
ABC-type amino acid transport system periplasmic component {ECO:0000313|EMBL:EMS96303.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
ABC-type amino acid transport system periplasmic component; K10036 glutamine transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_3236_3
unknown

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comp(1541..1645)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3236_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1787..3463)
DNA (1677bp) protein (559aa)
ABC transporter-like protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YX82_9RHIZ rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KFC73886.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein rbh
SCNpilot_cont_500_bf_scaffold_3236_5
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3468..4301)
DNA (834bp) protein (278aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8INH5_METNO rbh
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:KFC73887.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
binding-protein-dependent transport system inner membrane protein; K02034 peptide/nickel transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_3236_6
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4310..5269)
DNA (960bp) protein (320aa)
Oligopeptide ABC transporter n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TH72_TISMK rbh
Putative dipeptide transport system permease protein {ECO:0000313|EMBL:KFC73888.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
appB; oligopeptide ABC transporter rbh
SCNpilot_cont_500_bf_scaffold_3236_7
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5420..5632)
DNA (213bp) protein (71aa)
Putative ABC transporter, substrate binding protein dipeptide transporter n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0S285_9BRAD
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:KFC73889.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
peptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_3236_8
unknown

Not on your lists

comp(5953..6120)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_3236_9
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6164..7588
DNA (1425bp) protein (475aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Amidase-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y6G3_RAMTT
Amidase-like protein {ECO:0000313|EMBL:AEG94037.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCNpilot_cont_500_bf_scaffold_3236_10
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7810..8574)
DNA (765bp) protein (255aa)
dinucleotide-utilizing enzyme; K06989 aspartate dehydrogenase [EC:1.4.1.21]
Dinucleotide-utilizing enzyme n=1 Tax=Celeribacter baekdonensis B30 RepID=K2J7U8_9RHOB
Dinucleotide-utilizing enzyme {ECO:0000313|EMBL:EKE71243.1}; TaxID=1208323 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter baekdonensis B30.;"
SCNpilot_cont_500_bf_scaffold_3236_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8720..9394)
DNA (675bp) protein (225aa)
GntR family transcriptional regulator n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PP25_RHIML rbh
GntR family transcriptional regulator rbh
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44982.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_3236_12
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9599..10303
DNA (705bp) protein (235aa)
haloacid dehalogenase n=1 Tax=Martelella mediterranea RepID=UPI00036726E7 rbh
HAD-superfamily hydrolase rbh
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44701.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_3236_13
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10342..10998
DNA (657bp) protein (219aa)
Glutamate/aspartate periplasmic-binding protein 1 n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P4J7_RHIML
glutamate/aspartate periplasmic-binding protein 1
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44981.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_3236_14
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10995..11129
DNA (135bp) protein (45aa)
ABC transporter substrate-binding protein n=1 Tax=Martelella mediterranea RepID=UPI0003751DC7
glutamate/aspartate periplasmic-binding protein 1
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44981.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_3236_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11173..11889
DNA (717bp) protein (239aa)
Amino ABC transporter permease, 3-TM region, His/Glu/Gln/Arg/opine family domain-containing protein 1 n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PJ34_RHIML rbh
amino acid ABC transporter permease rbh
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44700.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_3236_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11893..12555
DNA (663bp) protein (221aa)
glutamate/aspartate transporter permease GltK n=1 Tax=Martelella mediterranea RepID=UPI000376A8DD rbh
glutamate/aspartate ABC transporter permease rbh
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44699.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_3236_17
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12612..13340
DNA (729bp) protein (243aa)
arginine ABC transporter ATP-binding protein n=1 Tax=Martelella mediterranea RepID=UPI0003657512 rbh
gltL; Glutamate/aspartate transport ATP-binding protein GltL rbh
ArtP protein {ECO:0000313|EMBL:KIU44980.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
SCNpilot_cont_500_bf_scaffold_3236_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13342..14343
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003669EAB rbh
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44698.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
putative threonine dehydratase rbh
SCNpilot_cont_500_bf_scaffold_3236_19
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14399..14998
DNA (600bp) protein (200aa)
aspartate aminotransferase (EC:2.6.1.1)
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44697.1}; EC=2.6.1.1 {ECO:0000313|EMBL:KIU44697.1};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
Aspartate aminotransferase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P4J9_RHIML
Displaying 19 items

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