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SCNpilot_cont_500_bf_scaffold_3325

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3325_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..502)
DNA (501bp) protein (167aa)
Alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
Alkaline phosphatase {ECO:0000313|EMBL:CDP50830.1}; EC=3.1.3.1 {ECO:0000313|EMBL:CDP50830.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Alkaline phosphatase n=1 Tax=Rahnella aquatilis (strain ATCC 33071 / DSM 4594 / JCM 1683 / NBRC 105701 / NCIMB 13365 / CIP 78.65) RepID=H2IXS5_RAHAC
SCNpilot_cont_500_bf_scaffold_3325_2
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(628..1491)
DNA (864bp) protein (288aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
glutathione synthetase (EC:6.3.2.3); K01920 glutathione synthase [EC:6.3.2.3]
glutathione synthetase n=1 Tax=Hoeflea sp. 108 RepID=UPI00036EC7B8
SCNpilot_cont_500_bf_scaffold_3325_3
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1546..1935)
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037FF7E1
hypothetical protein; K07460 putative endonuclease
UPF0102 protein KKY_3372 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_cont_500_bf_scaffold_3325_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1932..2831)
DNA (900bp) protein (300aa)
hypothetical protein; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E1DA8
SCNpilot_cont_500_bf_scaffold_3325_5
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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2908..4107
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036B4E68 rbh
Receptor family ligand binding region rbh
Receptor family ligand binding region {ECO:0000313|EMBL:ADZ68478.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_cont_500_bf_scaffold_3325_6
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4141..4758)
DNA (618bp) protein (206aa)
Protein GrpE n=1 Tax=Methylobacterium sp. GXF4 RepID=I9CT68_9RHIZ
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
heat shock protein GrpE; K03687 molecular chaperone GrpE
SCNpilot_cont_500_bf_scaffold_3325_7
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4809..5762)
DNA (954bp) protein (318aa)
pantothenate kinase; K00867 type I pantothenate kinase [EC:2.7.1.33]
Pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_00215, ECO:0000256|RuleBase:RU003530};; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_00215}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003615DC3 rbh
SCNpilot_cont_500_bf_scaffold_3325_8

Not on your lists

comp(5759..6091)
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037921E9
Uncharacterized protein {ECO:0000313|EMBL:KKN73652.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hisE; phosphoribosyl-ATP pyrophosphatase
SCNpilot_cont_500_bf_scaffold_3325_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6088..6873)
DNA (786bp) protein (262aa)
Imidazole glycerol phosphate synthase cyclase subunit; K02500 cyclase [EC:4.1.3.-]
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /;
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYY1_STAND
SCNpilot_cont_500_bf_scaffold_3325_10
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7113..7757)
DNA (645bp) protein (215aa)
Uncharacterized protein n=6 Tax=Rhizobium meliloti RepID=F6E3Z3_SINMK
hypothetical protein; K09992 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG75654.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
SCNpilot_cont_500_bf_scaffold_3325_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7848..8852
DNA (1005bp) protein (335aa)
hydroxyproline-2-epimerase; K12658 4-hydroxyproline epimerase [EC:5.1.1.8]
hypothetical protein n=1 Tax=Kiloniella laminariae RepID=UPI0003820F7A
Hydroxyproline-2-epimerase {ECO:0000313|EMBL:KGM30646.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_cont_500_bf_scaffold_3325_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9014..9235
DNA (222bp) protein (74aa)
UPI0003CFE72B related cluster n=1 Tax=unknown RepID=UPI0003CFE72B
Uncharacterized protein {ECO:0000313|EMBL:CDX46593.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative ABC-type transport system, periplasmic component/surface lipoprotein
SCNpilot_cont_500_bf_scaffold_3325_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9269..10030
DNA (762bp) protein (254aa)
UPI0003CDEC7A related cluster n=1 Tax=unknown RepID=UPI0003CDEC7A
ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW82073.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
putative ABC-type transport system, periplasmic component/surface lipoprotein
SCNpilot_cont_500_bf_scaffold_3325_14
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10326..11831
DNA (1506bp) protein (502aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17]
UPI0003CF0026 related cluster n=1 Tax=unknown RepID=UPI0003CF0026
Uncharacterized ABC transporter ATP-binding protein YufO {ECO:0000313|EMBL:CDX23061.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Displaying 14 items

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