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SCNpilot_cont_500_bf_scaffold_3887

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_3887_1
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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145..1077
DNA (933bp) protein (311aa)
Oxidoreductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QF69_9BRAD
Oxidoreductase {ECO:0000313|EMBL:KFC70905.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
oxidoreductase
SCNpilot_cont_500_bf_scaffold_3887_2
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1116..1556
DNA (441bp) protein (147aa)
trxC; thioredoxin (EC:1.8.1.8); K03672 thioredoxin 2 [EC:1.8.1.8]
Thioredoxin {ECO:0000313|EMBL:ACS43743.1}; EC=1.8.1.8 {ECO:0000313|EMBL:ACS43743.1};; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
Thioredoxin n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B5L1_METEA
SCNpilot_cont_500_bf_scaffold_3887_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1563..2129)
DNA (567bp) protein (189aa)
elongation factor P n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F230AF
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
elongation factor P; K02356 elongation factor P
SCNpilot_cont_500_bf_scaffold_3887_4
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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2242..3300
DNA (1059bp) protein (353aa)
lysine--tRNA ligase (EC:6.1.1.6); K04568 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SUL5_CAUSK
Lysyl-tRNA synthetase {ECO:0000313|EMBL:KFI27271.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
SCNpilot_cont_500_bf_scaffold_3887_5

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3297..4361
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036236F8
Radical SAM superfamily {ECO:0000313|EMBL:AGU11432.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
lysine 2,3-aminomutase YodO family protein
SCNpilot_cont_500_bf_scaffold_3887_6
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4346..5668)
DNA (1323bp) protein (441aa)
UPI0003CEAECB related cluster n=1 Tax=unknown RepID=UPI0003CEAECB
Chloride channel protein {ECO:0000313|EMBL:ESY90107.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
chloride channel protein EriC
SCNpilot_cont_500_bf_scaffold_3887_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5824..7380
DNA (1557bp) protein (519aa)
pcd; piperideine-6-carboxylate dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
aldehyde dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000381487B
Putative piperideine-6-carboxylate dehydrogenase {ECO:0000313|EMBL:CAK10068.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_cont_500_bf_scaffold_3887_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7387..8247)
DNA (861bp) protein (287aa)
Dihydroorotate dehydrogenase (Fumarate) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IM88_9BRAD
Dihydroorotate dehydrogenase (Fumarate) {ECO:0000313|EMBL:ERF84990.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_3887_9
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8265..9500)
DNA (1236bp) protein (412aa)
Secretory lipase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JGG6_HYPSM rbh
secretory lipase rbh
Secretory lipase {ECO:0000313|EMBL:CCB68070.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_cont_500_bf_scaffold_3887_10
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9587..10810
DNA (1224bp) protein (408aa)
Major facilitator superfamily MFS_1 n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UG91_SINMW rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABR62671.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_cont_500_bf_scaffold_3887_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10871..11791)
DNA (921bp) protein (307aa)
Substrate-binding region of ABC-type glycine betaine transport system n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TL67_TISMK rbh
ABC transporter {ECO:0000313|EMBL:KGM31024.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
osmF; glycine betaine ABC transporter substrate-binding protein rbh
Displaying 11 items

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