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SCNpilot_cont_500_bf_UNK

In projects: SCNPILOT_CONT_500_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 9.76 Longest contig: 386.69 Kbp Bin length: 82.77 Mbp GC content: 60.60 %
Contigs count: 37192 Features count: 111529 rRNAs count: 18 tRNAs count: 413

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 16
Displaying items 36551-36600 of 37192 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_32783
Species: Clostridium acetobutylicum (71.43%)
7 3482 bp 65.82 4.74 100.72
SCNpilot_cont_500_bf_scaffold_52744 3 1251 bp 68.59 2.00 100.72
SCNpilot_cont_500_bf_scaffold_32621
Order: Rhizobiales (66.67%)
3 2356 bp 66.47 4.56 100.72
SCNpilot_cont_500_bf_scaffold_67256
Species: Nitrobacter hamburgensis (50%)
2 1522 bp 66.49 4.11 100.72
SCNpilot_cont_500_bf_scaffold_53101 3 1245 bp 71.89 3.61 100.72
SCNpilot_cont_500_bf_scaffold_50836
Genus: Bradyrhizobium (50%)
4 2213 bp 67.69 3.50 100.72
SCNpilot_cont_500_bf_scaffold_96733
Order: Rhizobiales (100%)
3 1105 bp 64.98 4.07 100.72
SCNpilot_cont_500_bf_scaffold_30617
Species: Microbacterium mangrovi (100%)
3 1933 bp 71.81 11.77 100.72
SCNpilot_cont_500_bf_scaffold_30683
Genus: Bradyrhizobium (66.67%)
3 1930 bp 65.60 4.53 100.73
SCNpilot_cont_500_bf_scaffold_61636
Species: Phenylobacterium zucineum (50%)
2 1093 bp 70.08 5.26 100.73
SCNpilot_cont_500_bf_scaffold_47377
Species: Rhodanobacter denitrificans (100%)
2 1364 bp 65.03 16.31 100.73
SCNpilot_cont_500_bf_scaffold_38080
Phylum: Proteobacteria (66.67%)
3 1626 bp 63.41 2.61 100.74
SCNpilot_cont_500_bf_scaffold_62521
Species: Leifsonia aquatica (100%)
2 1078 bp 69.29 3.48 100.74
SCNpilot_cont_500_bf_scaffold_32019
Genus: Methylobacterium (66.67%)
3 3195 bp 67.67 3.60 100.75
SCNpilot_cont_500_bf_scaffold_43289
Species: Leifsonia aquatica (100%)
4 2388 bp 67.25 3.66 100.75
SCNpilot_cont_500_bf_scaffold_60629
Order: Burkholderiales (60%)
5 1581 bp 70.97 7.43 100.76
SCNpilot_cont_500_bf_scaffold_49771
Species: Magnetospirillum sp. SO-1 (50%)
2 1310 bp 73.97 4.58 100.76
SCNpilot_cont_500_bf_scaffold_14469
Species: Thiothrix nivea (50%)
2 3394 bp 37.39 3.54 100.77
SCNpilot_cont_500_bf_scaffold_39968
Species: R_Alphaproteobacteria_66_14 (100%)
2 1566 bp 68.84 3.19 100.77
SCNpilot_cont_500_bf_scaffold_44656
Species: Labrenzia aggregata (50%)
2 1432 bp 68.92 3.32 100.77
SCNpilot_cont_500_bf_scaffold_33141
Species: Hyphomicrobium denitrificans (100%)
3 1819 bp 55.09 7.83 100.77
SCNpilot_cont_500_bf_scaffold_44884 3 1426 bp 57.01 2.10 100.77
SCNpilot_cont_500_bf_scaffold_33278
Species: Pseudomonas sp. 21 (66.67%)
3 1813 bp 69.99 2.62 100.77
SCNpilot_cont_500_bf_scaffold_65040
Species: Bradyrhizobium sp. YR681 (50%)
2 1036 bp 64.48 3.38 100.77
SCNpilot_cont_500_bf_scaffold_65079 3 1036 bp 55.79 8.93 100.77
SCNpilot_cont_500_bf_scaffold_52416
Species: Brassica rapa (50%)
2 1938 bp 27.92 3.10 100.77
SCNpilot_cont_500_bf_scaffold_65269
Species: Mesorhizobium huakuii (50%)
2 1033 bp 65.34 48.16 100.77
SCNpilot_cont_500_bf_scaffold_26063
Species: R_Alphaproteobacteria_66_14 (100%)
3 2194 bp 68.51 3.99 100.77
SCNpilot_cont_500_bf_scaffold_51266
Species: Leifsonia xyli (66.67%)
3 1935 bp 73.64 3.62 100.77
SCNpilot_cont_500_bf_scaffold_42213 5 2700 bp 54.89 7.31 100.78
SCNpilot_cont_500_bf_scaffold_16643
Species: Leifsonia xyli (50%)
4 3066 bp 72.28 3.59 100.78
SCNpilot_cont_500_bf_scaffold_31127
Genus: Sphingomonas (100%)
4 1908 bp 70.13 2.75 100.79
SCNpilot_cont_500_bf_scaffold_22780
Species: Hyphomicrobium denitrificans (100%)
3 3932 bp 59.84 4.26 100.79
SCNpilot_cont_500_bf_scaffold_51858
Species: Mizugakiibacter sediminis (50%)
2 1268 bp 67.51 4.14 100.79
SCNpilot_cont_500_bf_scaffold_41752
Species: Sphingomonas wittichii (100%)
3 1512 bp 71.96 2.65 100.79
SCNpilot_cont_500_bf_scaffold_67247 3 1003 bp 71.39 4.74 100.80
SCNpilot_cont_500_bf_scaffold_67433
Species: Xanthobacter autotrophicus (50%)
2 1000 bp 62.50 3.75 100.80
SCNpilot_cont_500_bf_scaffold_46923
Species: Rhizobium freirei (50%)
2 1375 bp 67.27 5.09 100.80
SCNpilot_cont_500_bf_scaffold_28463 2 2845 bp 66.08 7.91 100.81
SCNpilot_cont_500_bf_scaffold_42762
Species: RIFOXYA2_FULL_Elusimicrobia_53_38_curated (50%)
2 1482 bp 37.04 3.88 100.81
SCNpilot_cont_500_bf_scaffold_60984
Species: Rhodopseudomonas palustris (50%)
2 1104 bp 67.03 4.76 100.82
SCNpilot_cont_500_bf_scaffold_62574
Species: Pseudomonas sp. 21 (100%)
3 1958 bp 65.27 3.70 100.82
SCNpilot_cont_500_bf_scaffold_54323 3 1223 bp 70.97 2.45 100.82
SCNpilot_cont_500_bf_scaffold_61702
Species: Pseudomonas sp. 21 (100%)
3 1092 bp 69.60 3.89 100.82
SCNpilot_cont_500_bf_scaffold_39794
Species: GWF2_Nitrospirae_44_13_curated (50%)
2 1571 bp 38.64 4.14 100.83
SCNpilot_cont_500_bf_scaffold_80934
Species: Xanthobacter autotrophicus (50%)
2 1327 bp 65.18 8.29 100.83
SCNpilot_cont_500_bf_scaffold_40013
Species: Oleiagrimonas soli (66.67%)
3 1565 bp 68.82 3.04 100.83
SCNpilot_cont_500_bf_scaffold_70844
Species: Nitrobacter hamburgensis (66.67%)
3 1553 bp 62.14 4.83 100.84
SCNpilot_cont_500_bf_scaffold_40386
Species: Pseudomonas sp. 21 (100%)
3 1553 bp 67.80 3.38 100.84
SCNpilot_cont_500_bf_scaffold_62799
Species: Chelativorans sp. BNC1 (50%)
2 1074 bp 64.53 4.19 100.84
Displaying items 36551-36600 of 37192 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.