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SCNpilot_cont_500_bf_UNK

In projects: SCNPILOT_CONT_500_BF

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 9.76 Longest contig: 386.69 Kbp Bin length: 82.77 Mbp GC content: 60.60 %
Contigs count: 37192 Features count: 111529 rRNAs count: 18 tRNAs count: 413

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 24 / 38 MC: 16
Displaying items 36601-36650 of 37192 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_49708
Species: Pseudomonas sp. 21 (100%)
3 1312 bp 66.84 2.86 100.84
SCNpilot_cont_500_bf_scaffold_40786
Species: Intrasporangium chromatireducens (100%)
2 1541 bp 72.94 4.22 100.84
SCNpilot_cont_500_bf_scaffold_37685
Species: R_Alphaproteobacteria_66_14 (100%)
3 1642 bp 66.57 3.81 100.85
SCNpilot_cont_500_bf_scaffold_64246
Species: Sphingomonas wittichii (100%)
2 1050 bp 67.52 3.33 100.86
SCNpilot_cont_500_bf_scaffold_17825
Species: Rhodanobacter thiooxydans (66.67%)
3 2915 bp 68.68 6.60 100.86
SCNpilot_cont_500_bf_scaffold_57737 3 1160 bp 72.59 2.37 100.86
SCNpilot_cont_500_bf_scaffold_51474
Order: Sphingomonadales (66.67%)
3 1276 bp 65.75 2.55 100.86
SCNpilot_cont_500_bf_scaffold_57884
Species: uncultured bacterium (50%)
2 1157 bp 64.13 27.66 100.86
SCNpilot_cont_500_bf_scaffold_52205
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (50%)
2 1261 bp 36.00 2.78 100.87
SCNpilot_cont_500_bf_scaffold_58587
Species: Singulisphaera acidiphila (66.67%)
3 1145 bp 65.50 3.06 100.87
SCNpilot_cont_500_bf_scaffold_28214
Species: Rhodanobacter denitrificans (60%)
5 4348 bp 71.78 19.26 100.87
SCNpilot_cont_500_bf_scaffold_65538
Domain: Bacteria (66.67%)
3 1029 bp 73.57 2.92 100.88
SCNpilot_cont_500_bf_scaffold_39154
Species: Mesorhizobium sp. ORS3359 (100%)
2 1591 bp 65.74 3.77 100.88
SCNpilot_cont_500_bf_scaffold_39168
Genus: Sphingomonas (100%)
3 1591 bp 72.09 3.77 100.88
SCNpilot_cont_500_bf_scaffold_39354 2 1585 bp 59.50 6.31 100.88
SCNpilot_cont_500_bf_scaffold_39458
Order: Burkholderiales (66.67%)
3 1582 bp 70.99 4.74 100.89
SCNpilot_cont_500_bf_scaffold_56813
Species: Inquilinus limosus (66.67%)
3 2141 bp 63.76 4.67 100.89
SCNpilot_cont_500_bf_scaffold_28850
Species: Terrabacter sp. 28 (100%)
3 2028 bp 73.72 10.72 100.89
SCNpilot_cont_500_bf_scaffold_47931
Species: Bradyrhizobium sp. DFCI-1 (100%)
2 1350 bp 63.48 6.85 100.89
SCNpilot_cont_500_bf_scaffold_53552
Class: Gammaproteobacteria (66.67%)
3 1237 bp 60.47 2.43 100.89
SCNpilot_cont_500_bf_scaffold_48071
Genus: Xanthomonas (66.67%)
3 1347 bp 74.39 2.97 100.89
SCNpilot_cont_500_bf_scaffold_59998
Order: Rhizobiales (50%)
4 1121 bp 68.33 3.79 100.89
SCNpilot_cont_500_bf_scaffold_36603
Species: Rhodopseudomonas palustris (50%)
4 1680 bp 67.56 6.10 100.89
SCNpilot_cont_500_bf_scaffold_60210
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1118 bp 45.53 2.91 100.89
SCNpilot_cont_500_bf_scaffold_31318
Phylum: Proteobacteria (66.67%)
3 1900 bp 67.05 3.16 100.90
SCNpilot_cont_500_bf_scaffold_42149
Species: Hyphomonadaceae bacterium BRH_c29 (66.67%)
3 2682 bp 59.69 25.26 100.90
SCNpilot_cont_500_bf_scaffold_67089
Species: marine sediment metagenome (50%)
2 1005 bp 65.87 3.73 100.90
SCNpilot_cont_500_bf_scaffold_48438
Species: Cellulomonas carbonis (50%)
2 1338 bp 68.61 5.98 100.90
SCNpilot_cont_500_bf_scaffold_20228
Genus: Sphingobium (100%)
3 2655 bp 59.59 4.61 100.90
SCNpilot_cont_500_bf_scaffold_34506
Genus: Herbaspirillum (66.67%)
3 1763 bp 65.85 4.11 100.91
SCNpilot_cont_500_bf_scaffold_44973 3 1424 bp 59.97 3.34 100.91
SCNpilot_cont_500_bf_scaffold_99182
Genus: Mesorhizobium (50%)
4 1094 bp 67.64 7.08 100.91
SCNpilot_cont_500_bf_scaffold_41223
Class: Alphaproteobacteria (50%)
4 1528 bp 72.64 3.60 100.92
SCNpilot_cont_500_bf_scaffold_62122
Species: Devosia sp. 17-2-E-8 (50%)
2 1085 bp 70.41 7.60 100.92
SCNpilot_cont_500_bf_scaffold_41898
Genus: Rhizobium (66.67%)
3 1507 bp 70.21 2.65 100.93
SCNpilot_cont_500_bf_scaffold_62852
Species: Bradyrhizobium japonicum (66.67%)
3 1073 bp 64.86 4.43 100.93
SCNpilot_cont_500_bf_scaffold_62875
Species: Sphingobium sp. C100 (50%)
2 1073 bp 63.65 2.33 100.93
SCNpilot_cont_500_bf_scaffold_50867 3 1287 bp 65.42 8.16 100.93
SCNpilot_cont_500_bf_scaffold_46200
Species: Hyphomicrobium denitrificans (100%)
2 1394 bp 64.49 12.20 100.93
SCNpilot_cont_500_bf_scaffold_38648
Species: Devosia geojensis (100%)
2 1608 bp 67.35 10.73 100.93
SCNpilot_cont_500_bf_scaffold_25630
Species: RHI_Legionellales_37_14 (50%)
2 3736 bp 32.68 4.08 100.94
SCNpilot_cont_500_bf_scaffold_37787
Species: Strongylocentrotus purpuratus (50%)
2 4045 bp 36.14 5.56 100.94
SCNpilot_cont_500_bf_scaffold_63362
Species: Streptomyces nodosus (50%)
2 1064 bp 71.43 3.29 100.94
SCNpilot_cont_500_bf_scaffold_38991
Species: bacterium YEK0313 (100%)
2 1596 bp 69.30 4.54 100.94
SCNpilot_cont_500_bf_scaffold_46642
Class: Alphaproteobacteria (66.67%)
3 1382 bp 72.00 2.89 100.94
SCNpilot_cont_500_bf_scaffold_42860
Species: Sphingomonas changbaiensis (66.67%)
3 1480 bp 67.70 3.21 100.95
SCNpilot_cont_500_bf_scaffold_27396
Class: Alphaproteobacteria (100%)
3 3043 bp 69.64 6.49 100.95
SCNpilot_cont_500_bf_scaffold_29706
Class: Alphaproteobacteria (100%)
3 1982 bp 70.18 3.15 100.96
SCNpilot_cont_500_bf_scaffold_52747
Species: actinobacterium acAMD-5 (50%)
2 1251 bp 75.62 3.00 100.96
SCNpilot_cont_500_bf_scaffold_53258
Species: CG_Rhodof_04 (50%)
2 1242 bp 65.86 4.03 100.97
Displaying items 36601-36650 of 37192 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.