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SCNpilot_cont_500_bf_scaffold_2133

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_2133_1
unknown

Not on your lists

comp(3..71)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2133_2
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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172..1515
DNA (1344bp) protein (448aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19]
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036AD0D5 rbh
SCNpilot_cont_500_bf_scaffold_2133_3
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1506..2495
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6B1FA rbh
Peptidase S33 family protein {ECO:0000313|EMBL:GAO37944.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative S33 family peptidase
SCNpilot_cont_500_bf_scaffold_2133_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2492..3133
DNA (642bp) protein (214aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
cmk; cytidylate kinase (EC:2.7.4.14)
cytidylate kinase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035E0BD2
SCNpilot_cont_500_bf_scaffold_2133_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3618..4385)
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AEC2_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE57140.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SAM-dependent methyltransferase
SCNpilot_cont_500_bf_scaffold_2133_6
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4567..5079
DNA (513bp) protein (171aa)
30S ribosomal protein S1 n=1 Tax=Sphingomonas sp. S17 RepID=F3WZK0_9SPHN
30S ribosomal protein S1 {ECO:0000256|PIRNR:PIRNR002111}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
30S ribosomal protein S1; K02945 small subunit ribosomal protein S1
SCNpilot_cont_500_bf_scaffold_2133_7
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5238..5519
DNA (282bp) protein (94aa)
integration host factor subunit beta n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB57A
Integration host factor subunit beta {ECO:0000256|RuleBase:RU003941, ECO:0000256|SAAS:SAAS00062449}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
ihfB; integration host factor beta subunit; K05788 integration host factor subunit beta
SCNpilot_cont_500_bf_scaffold_2133_8
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5554..7095
DNA (1542bp) protein (514aa)
ABC transporter substrate-binding protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B2F50F
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIT08165.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
ABC transporter periplasmic protein
SCNpilot_cont_500_bf_scaffold_2133_trna_1
unknown

Not on your lists

5558..5638
DNA (81bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_2133_9
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7107..7523
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C312
Uncharacterized protein {ECO:0000313|EMBL:KHA65605.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2133_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7586..8782)
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D5337 rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP71833.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_2133_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8779..9384)
DNA (606bp) protein (202aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI00028A0AFB
Uncharacterized protein {ECO:0000313|EMBL:EGD58806.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2133_12
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9439..10776
DNA (1338bp) protein (446aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1219049 species="Bacteria; Pr
rimO; ribosomal protein S12 methylthiotransferase; K14441 ribosomal protein S12 methylthiotransferase [EC:2.-.-.-] rbh
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Sphingomonas sp. S17 RepID=F3WUJ6_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_2133_trna_2
unknown

Not on your lists

10843..10916
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_2133_13
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10876..11355)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6E858
Uncharacterized protein {ECO:0000313|EMBL:AIT05681.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_2133_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11352..13328)
DNA (1977bp) protein (659aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000373EB8B rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
K+ potassium transporter; K03549 KUP system potassium uptake protein
SCNpilot_cont_500_bf_scaffold_2133_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13636..14292)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00038178D3
Uncharacterized protein {ECO:0000313|EMBL:AIT05685.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
cytochrome c biogenesis factor
SCNpilot_cont_500_bf_scaffold_2133_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14289..14723)
DNA (435bp) protein (145aa)
Putative cytochrome c-type biogenesis protein n=1 Tax=termite gut metagenome RepID=S0DF15_9ZZZZ
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
CcmE/CycJ protein; K02197 cytochrome c-type biogenesis protein CcmE
SCNpilot_cont_500_bf_scaffold_2133_17
unknown

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comp(14720..14824)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_2133_18
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14821..15546)
DNA (726bp) protein (242aa)
transcriptional regulator n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B69925 rbh
Heme ABC transporter permease {ECO:0000313|EMBL:KHA63212.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
heme exporter protein CcmC; K02195 heme exporter protein C rbh
SCNpilot_cont_500_bf_scaffold_2133_19

Not on your lists

comp(15769..16815)
DNA (1047bp) protein (349aa)
Glu/Leu/Phe/Val dehydrogenase; K00263 leucine dehydrogenase [EC:1.4.1.9]
Putative leucine dehydrogenase n=1 Tax=termite gut metagenome RepID=S0DG49_9ZZZZ rbh
Putative leucine dehydrogenase {ECO:0000313|EMBL:CCO21910.1}; TaxID=433724 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="termite gut metagenome.;"
SCNpilot_cont_500_bf_scaffold_2133_trna_4
unknown

Not on your lists

comp(16919..16992)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_2133_20
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17189..17911)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000380C77D
Type II secretion system protein N {ECO:0000313|EMBL:KHA62850.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
type II secretion system protein N
SCNpilot_cont_500_bf_scaffold_2133_21
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17908..18381)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F9EC7
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29157.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
general secretion pathway protein M
SCNpilot_cont_500_bf_scaffold_2133_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18378..19463)
DNA (1086bp) protein (362aa)
general secretion pathway protein L n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B61617 rbh
GspL protein {ECO:0000313|EMBL:GAN15216.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
general secretion pathway protein L
SCNpilot_cont_500_bf_scaffold_2133_23
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19460..20476)
DNA (1017bp) protein (339aa)
type II secretory pathway protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B49153 rbh
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
type II secretory pathway component PulK
SCNpilot_cont_500_bf_scaffold_2133_24
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20466..21323)
DNA (858bp) protein (286aa)
General secretion pathway protein J n=1 Tax=Sphingomonas sp. S17 RepID=F3WWI8_9SPHN
General secretion pathway protein J {ECO:0000313|EMBL:EZP51852.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
type II secretory pathway component PulJ
SCNpilot_cont_500_bf_scaffold_2133_25
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21320..21802)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036C18F3
General secretion pathway protein GspI {ECO:0000313|EMBL:KHA63046.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
type II secretory pathway component PulI
SCNpilot_cont_500_bf_scaffold_2133_26
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21795..22361)
DNA (567bp) protein (189aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000379EADC
Uncharacterized protein {ECO:0000313|EMBL:EZP51854.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
general secretion pathway protein H; K02457 general secretion pathway protein H
SCNpilot_cont_500_bf_scaffold_2133_27
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22336..22779)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000374909E
GspG protein {ECO:0000313|EMBL:GAN15221.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
type II secretion system protein G
Displaying items 1-30 of 52 in total

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