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SCNpilot_cont_500_bf_scaffold_207

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Displaying items 1-30 of 137 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_207_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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51..599
DNA (549bp) protein (183aa)
30S ribosomal protein S9 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000378C485
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
rpsI; 30S ribosomal protein S9
SCNpilot_cont_500_bf_scaffold_207_2
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

868..1563
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDC28
Uncharacterized protein {ECO:0000313|EMBL:AHE55855.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein; K06985 aspartyl protease family protein
SCNpilot_cont_500_bf_scaffold_207_3
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1553..2155)
DNA (603bp) protein (201aa)
ABC transporter-like protein; K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29]
molybdate ABC transporter ATP-binding protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4D6AB
ABC transporter family protein {ECO:0000313|EMBL:EZP51860.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_500_bf_scaffold_207_4
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2145..2828)
DNA (684bp) protein (228aa)
Molybdate ABC transporter, permease protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVU9_9SPHN
ModB protein {ECO:0000313|EMBL:GAN12719.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
molybdate ABC transporter permease; K02018 molybdate transport system permease protein
SCNpilot_cont_500_bf_scaffold_207_5
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2831..3574)
DNA (744bp) protein (248aa)
Molybdate ABC transporter, periplasmic molybdate-binding protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVU8_9SPHN
Molybdate ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAM01397.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
molybdenum ABC transporter periplasmic molybdate-binding protein; K02020 molybdate transport system substrate-binding protein
SCNpilot_cont_500_bf_scaffold_207_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3699..5495)
DNA (1797bp) protein (599aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
elongation factor 4 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B60773
GTP-binding protein LepA
SCNpilot_cont_500_bf_scaffold_207_7
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5638..6735
DNA (1098bp) protein (366aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630566 rbh
Protein involved in formation of curli polymers {ECO:0000313|EMBL:EJL34460.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_207_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6747..7268)
DNA (522bp) protein (174aa)
N-acetylglucosamine-6-phosphate isomerase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B49B8F
N-acetylglucosamine-6-phosphate isomerase {ECO:0000313|EMBL:AJP74433.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_207_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7265..7837)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037B1B4C
Sphingomonas taxi strain 30a NODE_21, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26978.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
putative transporter; K03811 nicotinamide mononucleotide transporter
SCNpilot_cont_500_bf_scaffold_207_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7916..9217
DNA (1302bp) protein (434aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289C988
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:AJP72148.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
SCNpilot_cont_500_bf_scaffold_207_trna_1
unknown

Not on your lists

9331..9404
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_207_11
unknown

Not on your lists

9586..10833
DNA (1248bp) protein (416aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_207_12
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10963..12288
DNA (1326bp) protein (442aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
homogentisate 1,2-dioxygenase (EC:1.13.11.5); K00451 homogentisate 1,2-dioxygenase [EC:1.13.11.5] rbh
homogentisate 1,2-dioxygenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4AC8E rbh
SCNpilot_cont_500_bf_scaffold_207_13
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12285..12920
DNA (636bp) protein (212aa)
hmgC; maleylacetoacetate isomerase (EC:5.2.1.2); K01800 maleylacetoacetate isomerase [EC:5.2.1.2] rbh
Maleylacetoacetate isomerase {ECO:0000313|EMBL:BAI98523.1}; EC=5.2.1.2 {ECO:0000313|EMBL:BAI98523.1};; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
maleylacetoacetate isomerase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B33B93 rbh
SCNpilot_cont_500_bf_scaffold_207_14
Erythrobacter sp. SD-21, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12927..13148)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PBV1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EDL48521.1}; TaxID=161528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. SD-21.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_207_15
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13234..13716
DNA (483bp) protein (161aa)
camphor resistance protein CrcB n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5A427
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
protein CrcB-like protein; K06199 CrcB protein
SCNpilot_cont_500_bf_scaffold_207_16
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13713..14810
DNA (1098bp) protein (366aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
rluC; ribosomal large subunit pseudouridine synthase C; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] rbh
pseudouridine synthase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B367B2
SCNpilot_cont_500_bf_scaffold_207_17
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14810..15421
DNA (612bp) protein (204aa)
FMN-binding negative transcriptional regulator n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A3D1
FMN-binding negative transcriptional regulator; K07734 transcriptional regulator
FMN-binding negative transcriptional regulator {ECO:0000313|EMBL:ABZ72806.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_500_bf_scaffold_207_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15460..15684)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1WC64_9ZZZZ
Putative membrane protein {ECO:0000313|EMBL:EZP53092.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_500_bf_scaffold_207_19
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15853..16080
DNA (228bp) protein (76aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000381C238
Uncharacterized protein {ECO:0000313|EMBL:KHA62962.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
SCNpilot_cont_500_bf_scaffold_207_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16077..16766
DNA (690bp) protein (230aa)
ATPase n=1 Tax=Sphingomonas elodea RepID=UPI0002632194
DNA, contig: SP604 {ECO:0000313|EMBL:GAN12144.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
ATP12 ATPase
SCNpilot_cont_500_bf_scaffold_207_21
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16870..17526)
DNA (657bp) protein (219aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
guanylate kinase (EC:2.7.4.8); K00942 guanylate kinase [EC:2.7.4.8] rbh
guanylate kinase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000376F72A rbh
SCNpilot_cont_500_bf_scaffold_207_22
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17604..17816)
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B61608
Uncharacterized protein {ECO:0000313|EMBL:EZP52509.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_207_23
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17818..18276)
DNA (459bp) protein (153aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
fumC; fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
Fumarate hydratase class II n=1 Tax=Sphingobium indicum B90A RepID=I5B9E7_9SPHN
SCNpilot_cont_500_bf_scaffold_207_24
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

Not on your lists

18317..19192
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Pelagibaca bermudensis (strain JCM 13377 / KCTC 12554 / HTCC2601) RepID=Q0FH14_PELBH
Uncharacterized protein {ECO:0000313|EMBL:KIY13119.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
SCNpilot_cont_500_bf_scaffold_207_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19278..19766)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3E246
Uncharacterized protein {ECO:0000313|EMBL:AIT06771.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_207_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19852..20439
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hisB; imidazoleglycerol-phosphate dehydratase; K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
imidazoleglycerol-phosphate dehydratase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287D137
SCNpilot_cont_500_bf_scaffold_207_27
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20441..20758
DNA (318bp) protein (106aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289533B
Uncharacterized protein {ECO:0000313|EMBL:KAI95128.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_207_28
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20755..21360
DNA (606bp) protein (202aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-]
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Sphingomonas sp. S17 RepID=F3X0F4_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_207_29
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21357..22091
DNA (735bp) protein (245aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC:5.3.1.16); K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003721162 rbh
Displaying items 1-30 of 137 in total

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