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SCNpilot_cont_500_bf_scaffold_378

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_378_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

173..2200
DNA (2028bp) protein (676aa)
Conjugal transfer coupling protein TraG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H9_9SPHN rbh
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:ENY82802.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_500_bf_scaffold_378_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2203..2601
DNA (399bp) protein (133aa)
Helix-turn-helix protein, CopG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH68_9SPHN
Helix-turn-helix protein, CopG {ECO:0000313|EMBL:ENY82801.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
Helix-turn-helix protein, CopG
SCNpilot_cont_500_bf_scaffold_378_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2598..3584
DNA (987bp) protein (329aa)
conjugal transfer protein TrbB n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC6 rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:ENY82800.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_cont_500_bf_scaffold_378_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3587..3922
DNA (336bp) protein (112aa)
Conjugal transfer protein TrbC n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX20_9SPHN
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ENY82799.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_378_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3919..4182
DNA (264bp) protein (88aa)
conjugal transfer protein TrbD n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC4
Conjugal transfer protein TrbD {ECO:0000313|EMBL:ENY82798.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_378_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4176..6602
DNA (2427bp) protein (809aa)
conjugal transfer protein TrbE n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC3 rbh
Conjugal transfer ATPase TrbE {ECO:0000313|EMBL:ENY82797.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_cont_500_bf_scaffold_378_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6625..7350
DNA (726bp) protein (242aa)
conjugal transfer protein TrbJ n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC2 rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:ENY82796.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbJ rbh
SCNpilot_cont_500_bf_scaffold_378_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7468..8772
DNA (1305bp) protein (435aa)
conjugal transfer protein TrbL n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEC1 rbh
Conjugal transfer protein TrbL {ECO:0000313|EMBL:ENY82795.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_378_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8772..9590
DNA (819bp) protein (273aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX16_9SPHN rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:ENY82794.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_cont_500_bf_scaffold_378_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9587..10531
DNA (945bp) protein (315aa)
P-type conjugative transfer protein TrbG n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WGI4_9SPHN rbh
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:ENY82793.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_500_bf_scaffold_378_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10528..11727
DNA (1200bp) protein (400aa)
Conjugal transfer protein TrbI n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W5H2_9SPHN rbh
Conjugal transfer protein TrbI {ECO:0000313|EMBL:ENY82792.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10 rbh
SCNpilot_cont_500_bf_scaffold_378_12
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11729..11959
DNA (231bp) protein (77aa)
UPI0003D5C9F6 related cluster n=1 Tax=unknown RepID=UPI0003D5C9F6
Uncharacterized protein {ECO:0000313|EMBL:ETI65307.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_378_13
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11956..12156
DNA (201bp) protein (67aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003748E71
Uncharacterized protein {ECO:0000313|EMBL:EQB33258.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_378_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12130..13464)
DNA (1335bp) protein (445aa)
serine kinase HipA; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
HipA N-terminal domain protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QWP7_METTR rbh
HipA protein {ECO:0000313|EMBL:EJW10829.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
SCNpilot_cont_500_bf_scaffold_378_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13461..13751)
DNA (291bp) protein (97aa)
Putative transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J3ABB4_9SPHN
Putative transcriptional regulator {ECO:0000313|EMBL:EJL28679.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_378_16
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13896..15128)
DNA (1233bp) protein (411aa)
integrase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AEB9 rbh
Integrase {ECO:0000313|EMBL:ETI65309.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
putative integrase rbh
SCNpilot_cont_500_bf_scaffold_378_17
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15305..16729
DNA (1425bp) protein (475aa)
recombinase n=1 Tax=Sphingobium chinhatense RepID=UPI00037220DE rbh
Recombinase {ECO:0000313|EMBL:KER36603.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
putative phage integrase
SCNpilot_cont_500_bf_scaffold_378_18
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16704..16892)
DNA (189bp) protein (63aa)
UPI0003D5E888 related cluster n=1 Tax=unknown RepID=UPI0003D5E888
Excisionase {ECO:0000313|EMBL:ETI64177.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_378_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16889..17104)
DNA (216bp) protein (72aa)
DNA-binding protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0JA67_9SPHN
DNA-binding protein {ECO:0000313|EMBL:KEZ21164.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
phage transcriptional regulator, AlpA; K07733 prophage regulatory protein
SCNpilot_cont_500_bf_scaffold_378_20
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17589..18011
DNA (423bp) protein (141aa)
Toxin RelE n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HDT4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11167.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_378_21
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17989..18321
DNA (333bp) protein (111aa)
DNA-binding protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0HIZ8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJA11166.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
XRE family transcriptional regulator; K07726 putative transcriptional regulator
SCNpilot_cont_500_bf_scaffold_378_22
unknown

Not on your lists

comp(18416..18796)
DNA (381bp) protein (127aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_378_23
unknown

Not on your lists

18903..20171
DNA (1269bp) protein (423aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_378_24
unknown

Not on your lists

20211..20771
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_378_25
unknown

Not on your lists

comp(20701..21291)
DNA (591bp) protein (197aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_378_26
unknown

Not on your lists

comp(21288..22736)
DNA (1449bp) protein (483aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003473354 rbh
SCNpilot_cont_500_bf_scaffold_378_27
unknown

Not on your lists

comp(22733..23116)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000347133A
SCNpilot_cont_500_bf_scaffold_378_28
unknown

Not on your lists

23299..24069
DNA (771bp) protein (257aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_378_29
unknown

Not on your lists

24159..24521
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_378_30
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24637..24957)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. HDIP04 RepID=T0G1I4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EPR18033.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
conjugal transfer TraD family protein
Displaying items 1-30 of 85 in total

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