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SCNpilot_cont_500_bf_scaffold_422

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_422_1
unknown

Not on your lists

comp(2..97)
DNA (96bp) protein (32aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_422_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(152..1168)
DNA (1017bp) protein (339aa)
VacJ-like lipoprotein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7H9_9SPHN
VacJ lipoprotein {ECO:0000313|EMBL:GAO55500.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
vacJ; surface lipoprotein; K04754 lipoprotein
SCNpilot_cont_500_bf_scaffold_422_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1165..1758)
DNA (594bp) protein (198aa)
Hopanoid biosynthesis associated membrane protein HpnM n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO55499.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Hopanoid biosynthesis associated membrane protein HpnM
SCNpilot_cont_500_bf_scaffold_422_4
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1929..2894
DNA (966bp) protein (322aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hydroxymethylbutenyl pyrophosphate reductase (EC:1.17.1.2); K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H6_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_422_5
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2905..4050
DNA (1146bp) protein (382aa)
radical SAM protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA105
Uncharacterized protein {ECO:0000313|EMBL:GAO40249.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Fe-S oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_422_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4054..4713)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0003776DB5
Uncharacterized protein {ECO:0000313|EMBL:GAO40250.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hopanoid-associated phosphorylase
SCNpilot_cont_500_bf_scaffold_422_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4710..6653)
DNA (1944bp) protein (648aa)
Squalene--hopene cyclase {ECO:0000313|EMBL:GAO55496.1}; EC=5.4.99.17 {ECO:0000313|EMBL:GAO55496.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Squalene hopene cyclase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H4_9SPHN rbh
squalene-hopene cyclase
SCNpilot_cont_500_bf_scaffold_422_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6811..7515)
DNA (705bp) protein (235aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F306F9
glutaredoxin
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15831.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_500_bf_scaffold_422_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7625..8023
DNA (399bp) protein (133aa)
MerR family transcriptional regulator n=1 Tax=Sphingomonas elodea RepID=UPI0002631AD8
DNA, contig: SP668 {ECO:0000313|EMBL:GAN15830.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
MerR family transcriptional regulator; K08365 MerR family transcriptional regulator, mercuric resistance operon regulatory protein
SCNpilot_cont_500_bf_scaffold_422_10
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8030..9217)
DNA (1188bp) protein (396aa)
UPI0003D65C9A related cluster n=1 Tax=unknown RepID=UPI0003D65C9A
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETI65770.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
acyl-CoA dehydrogenase
SCNpilot_cont_500_bf_scaffold_422_11
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9386..9781
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00036E15ED
DoxX family protein; K15977 putative oxidoreductase
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_500_bf_scaffold_422_12
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9721..11274)
DNA (1554bp) protein (518aa)
hypothetical protein n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B36933
Uncharacterized protein {ECO:0000313|EMBL:KGB56612.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_422_13
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11363..13753)
DNA (2391bp) protein (797aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas melonis RepID=UPI00037521D0 rbh
DNA, contig: SP613 {ECO:0000313|EMBL:GAN12763.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_500_bf_scaffold_422_14
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

14009..16201
DNA (2193bp) protein (731aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1183438 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
katG; catalase/peroxidase (EC:1.11.1.21) rbh
catalase/hydroperoxidase HPI(I) n=1 Tax=Sphingomonas elodea RepID=UPI0002630B15 rbh
SCNpilot_cont_500_bf_scaffold_422_15
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16253..16639
DNA (387bp) protein (129aa)
heme biosynthesis protein HemY n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B41991
Heme biosynthesis protein HemY {ECO:0000313|EMBL:EQB31718.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
iron-sulfur cluster assembly accessory protein
SCNpilot_cont_500_bf_scaffold_422_16
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16596..17417
DNA (822bp) protein (274aa)
exodeoxyribonuclease III (xth); K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
exodeoxyribonuclease III n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036C6589
Exodeoxyribonuclease III {ECO:0000313|EMBL:AIT06007.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_500_bf_scaffold_422_17
unknown

Not on your lists

17754..17987
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036C60D8
SCNpilot_cont_500_bf_scaffold_422_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18046..19233)
DNA (1188bp) protein (396aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036E65CC rbh
Uncharacterized protein {ECO:0000313|EMBL:EZP52612.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_422_19
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19310..20386
DNA (1077bp) protein (359aa)
fatty acid desaturase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B2F8F2 rbh
Fatty acid desaturase {ECO:0000313|EMBL:AIT06274.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
fatty acid desaturase
SCNpilot_cont_500_bf_scaffold_422_20
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20510..21601)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000366D3D9
Permease {ECO:0000313|EMBL:AIT06273.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
permease YjgP/YjgQ family protein rbh
SCNpilot_cont_500_bf_scaffold_422_21
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21598..22800)
DNA (1203bp) protein (401aa)
YjgP/YjgQ family permease n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000366CA71 rbh
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12328.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
YjgP/YjgQ family permease rbh
SCNpilot_cont_500_bf_scaffold_422_22
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23215..25170)
DNA (1956bp) protein (652aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00036C95C4
Kinase {ECO:0000313|EMBL:AIT08079.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
integral membrane sensor hybrid histidine kinase
SCNpilot_cont_500_bf_scaffold_422_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25312..26571)
DNA (1260bp) protein (420aa)
bioF; 8-amino-7-oxononanoate synthase (EC:2.3.1.47); K00652 8-amino-7-oxononanoate synthase [EC:2.3.1.47] rbh
8-amino-7-oxononanoate synthase n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI0002893467
DNA, contig: SP607 {ECO:0000313|EMBL:GAN12330.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
SCNpilot_cont_500_bf_scaffold_422_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26573..26815)
DNA (243bp) protein (81aa)
phosphopantetheine-binding protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028981A8
Sphingomonas taxi strain 30a NODE_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28468.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
acyl carrier protein
SCNpilot_cont_500_bf_scaffold_422_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26945..27946)
DNA (1002bp) protein (334aa)
type II secretion system protein n=1 Tax=Sphingomonas melonis RepID=UPI00035FA602
Pilus assembly protein TadC {ECO:0000313|EMBL:AJP70924.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
type II secretion system protein
SCNpilot_cont_500_bf_scaffold_422_26
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27951..28925)
DNA (975bp) protein (325aa)
tight adherence protein B n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC3DE rbh
Pilus assembly protein TadB {ECO:0000313|EMBL:KHA63398.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
Flp pilus assembly protein TadB
SCNpilot_cont_500_bf_scaffold_422_27
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28983..30278)
DNA (1296bp) protein (432aa)
pilus assembly protein CpaE n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000287F4F0
Flp pilus assembly protein ATPase CpaE {ECO:0000313|EMBL:EZP57362.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
cpaE; Flp pilus assembly protein ATPase CpaE; K02282 pilus assembly protein CpaE rbh
SCNpilot_cont_500_bf_scaffold_422_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30280..30939)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26621 RepID=UPI000288631D
Pilus assembly protein CpaD {ECO:0000313|EMBL:AIT08026.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_422_29
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30939..32558)
DNA (1620bp) protein (540aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000379FDD3
Secretion system protein {ECO:0000313|EMBL:KHA63399.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
type II secretion system protein; K02280 pilus assembly protein CpaC
SCNpilot_cont_500_bf_scaffold_422_30
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32560..33570)
DNA (1011bp) protein (337aa)
pilus assembly protein CpaB n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC026 rbh
Flp pilus assembly CpaB {ECO:0000313|EMBL:EZP57365.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
Flp pilus assembly protein CpaB
Displaying items 1-30 of 58 in total

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