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SCNpilot_cont_500_bf_scaffold_722

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_722_1
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(187..1200)
DNA (1014bp) protein (338aa)
aldo/keto reductase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489BA0 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE52094.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
putative oxidoreductase
SCNpilot_cont_500_bf_scaffold_722_2
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1321..2271)
DNA (951bp) protein (317aa)
oxidoreductase domain-containing protein; K10219 2-hydroxy-4-carboxymuconate semialdehyde hemiacetal dehydrogenase [EC:1.1.1.312]
oxidoreductase n=1 Tax=Sphingobium xenophagum RepID=UPI0002E61FCE
Oxidoreductase {ECO:0000313|EMBL:AHE55173.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_cont_500_bf_scaffold_722_3
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2300..3178)
DNA (879bp) protein (293aa)
protocatechuate 4,5-dioxygenase subunit beta (EC:1.13.11.8); K04101 protocatechuate 4,5-dioxygenase, beta chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase, beta chain id=2541302 bin=GWF1_Rhodobacteraceae_65_7 species=Sphingobium japonicum genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_cont_500_bf_scaffold_722_4
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3178..3588)
DNA (411bp) protein (137aa)
protocatechuate 4,5-dioxygenase subunit alpha (EC:1.13.11.8); K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
Protocatechuate 4,5-dioxygenase subunit alpha n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HPS8_9SPHN
Protocatechuate 4,5-dioxygenase subunit alpha {ECO:0000313|EMBL:EQB18336.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
SCNpilot_cont_500_bf_scaffold_722_5
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3585..4610)
DNA (1026bp) protein (342aa)
amidohydrolase 2; K10220 4-oxalmesaconate hydratase [EC:4.2.1.83] rbh
Amidohydrolase 2 n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QIU3_BRESC rbh
Amidohydrolase 2 {ECO:0000313|EMBL:ADL01426.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_cont_500_bf_scaffold_722_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4607..5473)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002DCC107 rbh
6-phosphogluconate dehydrogenase {ECO:0000313|EMBL:AJP73357.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphogluconate dehydrogenase
SCNpilot_cont_500_bf_scaffold_722_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5668..6861)
DNA (1194bp) protein (398aa)
Transcriptional regulator, LysR family n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QIU5_BRESC rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AJP73356.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_722_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7063..7737
DNA (675bp) protein (225aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; K10218 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17] rbh
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4BE9B rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP73355.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_500_bf_scaffold_722_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7730..8791
DNA (1062bp) protein (354aa)
UPI0003CFA9F0 related cluster n=1 Tax=unknown RepID=UPI0003CFA9F0
4-oxalomesaconate tautomerase {ECO:0000313|EMBL:AJP73354.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein; K09788 hypothetical protein
SCNpilot_cont_500_bf_scaffold_722_10
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8788..9669
DNA (882bp) protein (294aa)
amidohydrolase 2; K10221 2-pyrone-4,6-dicarboxylate lactonase [EC:3.1.1.57] rbh
2-pyrone-4,6-dicarboxylate hydrolase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BDD7
Uncharacterized protein {ECO:0000313|EMBL:EKU76033.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_cont_500_bf_scaffold_722_11
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9723..10115
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0G9U8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97431.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_722_12
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10124..11146)
DNA (1023bp) protein (341aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VH98_RHOPX
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:KFC68606.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
PAS/PAC sensor -containing diguanylate cyclase/phosphodiesterase
SCNpilot_cont_500_bf_scaffold_722_13
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11386..13062
DNA (1677bp) protein (559aa)
putative integral membrane protein (EC:4.6.1.1)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0002FE9795
Uncharacterized protein {ECO:0000313|EMBL:AEG06946.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_cont_500_bf_scaffold_722_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13112..15424)
DNA (2313bp) protein (771aa)
ligand-gated channel protein n=1 Tax=Sphingomonas wittichii RepID=UPI000306DAA7 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO53475.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor rbh
SCNpilot_cont_500_bf_scaffold_722_15
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15726..18572
DNA (2847bp) protein (949aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0003642882
Uncharacterized protein {ECO:0000313|EMBL:ABQ67282.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_722_16
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18598..19944
DNA (1347bp) protein (449aa)
Amidohydrolase family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QPA4_BREDI
Xaa-Pro dipeptidase {ECO:0000313|EMBL:KGK57156.1}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
amidohydrolase
SCNpilot_cont_500_bf_scaffold_722_17
gamma proteobacterium HdN1, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20437..21465
DNA (1029bp) protein (343aa)
Acyltransferase 3 n=1 Tax=gamma proteobacterium HdN1 RepID=E1VM01_9GAMM
acyltransferase
Acyltransferase 3 {ECO:0000313|EMBL:CBL45843.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCNpilot_cont_500_bf_scaffold_722_trna_3
unknown

Not on your lists

comp(21495..21573)
DNA (79bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_722_18
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21759..22745
DNA (987bp) protein (329aa)
putative 2-alkenal reductase (EC:1.3.1.74); K07119 rbh
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000374FA26 rbh
Zinc-binding dehydrogenase family protein {ECO:0000313|EMBL:EZP55367.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
SCNpilot_cont_500_bf_scaffold_722_19
Sphingopyxis sp. OB-3, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22809..23705)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003780EF8 rbh
BroH {ECO:0000313|EMBL:AFA53636.1}; Flags: Fragment;; TaxID=1107309 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. OB-3.;"
alpha/beta hydrolase
SCNpilot_cont_500_bf_scaffold_722_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23772..24029)
DNA (258bp) protein (86aa)
Rieske [2Fe-2S] domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WVJ3_9SPHN
DNA, contig: SP613 {ECO:0000313|EMBL:GAN12842.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
Rieske (2Fe-2S) domain-containing protein
SCNpilot_cont_500_bf_scaffold_722_21
Sphingomonas sp. BHC-A, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24243..25280)
DNA (1038bp) protein (346aa)
putative 4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Sphingobium indicum B90A RepID=I5BFI8_9SPHN
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:KEY98290.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
SCNpilot_cont_500_bf_scaffold_722_22
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25364..25807
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036E1E0B
MarR family transcriptional regulator {ECO:0000313|EMBL:KHA64881.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
MarR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_722_23
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25903..26982)
DNA (1080bp) protein (360aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Sphingomonas melonis RepID=UPI00036C2DF9 rbh
SCNpilot_cont_500_bf_scaffold_722_24
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27235..28413)
DNA (1179bp) protein (393aa)
acetyl-CoA acetyltransferase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000360A74B rbh
Putative acetyl-CoA acyltransferase {ECO:0000313|EMBL:GAO37916.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative acetyl-CoA acyltransferase rbh
SCNpilot_cont_500_bf_scaffold_722_25
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28461..28910)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037B7BFC
Nodulation protein NodN {ECO:0000313|EMBL:AIT06159.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
MaoC domain-containing protein
SCNpilot_cont_500_bf_scaffold_722_26
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29076..30245)
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003794B25
Mechanosensitive ion channel protein MscS {ECO:0000313|EMBL:KHA64500.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
putative mechanosensitive ion channel
SCNpilot_cont_500_bf_scaffold_722_27
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30433..31782)
DNA (1350bp) protein (450aa)
polymerase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000289F25B
Polymerase {ECO:0000313|EMBL:KHA64505.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_722_28
unknown

Not on your lists

comp(31775..31915)
DNA (141bp) protein (47aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037592F1
SCNpilot_cont_500_bf_scaffold_722_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32008..33246
DNA (1239bp) protein (413aa)
glycosyl transferase family 1 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000371CF40
Glycosyl transferase family 1 {ECO:0000313|EMBL:AIT08060.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
group 1 glycosyl transferase
Displaying items 1-30 of 56 in total

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