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SCNpilot_cont_500_bf_scaffold_788

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_788_1
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..110
DNA (108bp) protein (36aa)
Luciferase family protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0S4_9SPHN
luciferase family protein
Luciferase family protein {ECO:0000313|EMBL:AGH48054.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_788_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(150..2459)
DNA (2310bp) protein (770aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489F71 rbh
TonB-dependent receptor, plug {ECO:0000313|EMBL:ABP64584.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
TonB-dependent receptor, plug rbh
SCNpilot_cont_500_bf_scaffold_788_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2612..3076)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SK44_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH50942.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_788_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3080..4324)
DNA (1245bp) protein (415aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XF72_NOVAD rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABP64583.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_788_5
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4472..5647)
DNA (1176bp) protein (392aa)
regulatory protein LuxR n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489B98 rbh
Regulatory protein LuxR {ECO:0000313|EMBL:KGB56754.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
regulatory protein LuxR
SCNpilot_cont_500_bf_scaffold_788_6
Pandoraea vervacti, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5641..6912)
DNA (1272bp) protein (424aa)
major facilitator transporter n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489B9A rbh
Uncharacterized protein {ECO:0000313|EMBL:AJP56821.1}; TaxID=656178 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea vervacti.;"
major facilitator transporter
SCNpilot_cont_500_bf_scaffold_788_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6933..7658)
DNA (726bp) protein (242aa)
short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489B9B rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AGH48655.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_788_8
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7663..8412)
DNA (750bp) protein (250aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2E3_9SPHN rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AGH48654.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_788_9
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8412..10544)
DNA (2133bp) protein (711aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S145_9SPHN rbh
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:AGH48653.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
NADH:flavin oxidoreductase/NADH oxidase rbh
SCNpilot_cont_500_bf_scaffold_788_10
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10571..11017)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002489B9E
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGH48652.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_788_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11152..11640
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB21
Putative dehydratase {ECO:0000313|EMBL:GAD50704.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_788_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11643..12164
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XF78_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP64589.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_788_13
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12261..13043
DNA (783bp) protein (261aa)
hypothetical protein n=1 Tax=Rheinheimera perlucida RepID=UPI00037E501E
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:KGB56763.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
HTH domain-containing protein
SCNpilot_cont_500_bf_scaffold_788_14
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13143..14573
DNA (1431bp) protein (477aa)
cytochrome P450; K05917 cytochrome P450, family 51 (sterol 14-demethylase) [EC:1.14.13.70] rbh
Cytochrome P450 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XF07_NOVAD rbh
Cytochrome P450 {ECO:0000313|EMBL:KGB56764.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
SCNpilot_cont_500_bf_scaffold_788_15
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14573..14908
DNA (336bp) protein (112aa)
Ferredoxin n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XF06_NOVAD
Ferredoxin {ECO:0000313|EMBL:KGB56765.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
ferredoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_cont_500_bf_scaffold_788_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15103..17502
DNA (2400bp) protein (800aa)
Putative TonB-dependent receptor n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLN3_9SPHN rbh
Putative TonB-dependent receptor {ECO:0000313|EMBL:GAD49302.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
TonB-dependent receptor, plug rbh
SCNpilot_cont_500_bf_scaffold_788_17
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17508..18521
DNA (1014bp) protein (338aa)
Metallophosphoesterase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S068_9SPHN rbh
metallophosphoesterase rbh
Metallophosphoesterase {ECO:0000313|EMBL:AGH49171.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_788_18
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18609..19316)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y5J4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48391.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_788_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19504..21246
DNA (1743bp) protein (581aa)
Amidohydrolase 3 n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SFC2_9SPHN rbh
Amidohydrolase {ECO:0000313|EMBL:KGH25252.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
amidohydrolase 3 rbh
SCNpilot_cont_500_bf_scaffold_788_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21304..22176
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJE2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD48545.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_788_21
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22445..22819
DNA (375bp) protein (125aa)
PRC-barrel domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4Z6_SPHWW
Photosystem reaction center protein H {ECO:0000313|EMBL:KKC27908.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
PRC-barrel domain-containing protein
SCNpilot_cont_500_bf_scaffold_788_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23015..27019
DNA (4005bp) protein (1335aa)
Amino acid adenylation domain-containing protein n=3 Tax=Amycolatopsis mediterranei RepID=D8I5I4_AMYMU rbh
Siderophore biosynthesis non-ribosomal peptide synthetase modules {ECO:0000313|EMBL:GAO54654.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amino acid adenylation domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_788_23
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27130..28899)
DNA (1770bp) protein (590aa)
DEAD/DEAH box helicase-like protein; K05592 ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
DEAD/DEAH box helicase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B31B36 rbh
DEAD/DEAH box helicase-like protein {ECO:0000313|EMBL:EGD57451.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_500_bf_scaffold_788_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29256..31424)
DNA (2169bp) protein (723aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488608 rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:ABD27519.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_788_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31777..32406)
DNA (630bp) protein (210aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3Q3_NOVAD
TetR family transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD27520.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_788_26
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32467..33726)
DNA (1260bp) protein (420aa)
Erythromycin esterase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V7B2_SPHWW rbh
erythromycin esterase rbh
Erythromycin esterase {ECO:0000313|EMBL:ABQ68178.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_cont_500_bf_scaffold_788_27
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33723..34475)
DNA (753bp) protein (251aa)
Beta-lactamase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V7B3_SPHWW
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ABQ68179.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 27 items

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