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SCNpilot_cont_500_bf_scaffold_807

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_807_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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137..1459
DNA (1323bp) protein (441aa)
porin n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB139 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAM01429.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_807_2
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1645..2340
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035CFE56
Sphingomonas taxi strain 30a NODE_64, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26768.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
phosphatidic acid phosphatase
SCNpilot_cont_500_bf_scaffold_807_3
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2320..3147)
DNA (828bp) protein (276aa)
HpcH/HpaI aldolase; K01644 citrate lyase subunit beta / citryl-CoA lyase [EC:4.1.3.6 4.1.3.34]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000369996F
Putative citrate lyase beta chain {ECO:0000313|EMBL:GAM02425.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_500_bf_scaffold_807_4
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3144..4142)
DNA (999bp) protein (333aa)
UDP-glucose 4-epimerase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B6C027 rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:GAM02424.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
UDP-galactose 4-epimerase
SCNpilot_cont_500_bf_scaffold_807_5
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4343..4879
DNA (537bp) protein (179aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
msrA; peptide methionine sulfoxide reductase (EC:1.8.4.11); K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
methionine sulfoxide reductase A n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B54122
SCNpilot_cont_500_bf_scaffold_807_6
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4938..5501)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4P126_9CAUL
Putative acetyltransferase {ECO:0000313|EMBL:GAO40504.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
putative GCN5-related N-acetyltransferase
SCNpilot_cont_500_bf_scaffold_807_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5552..6469)
DNA (918bp) protein (306aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
translation factor Sua5 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B4E68F
translation factor SUA5
SCNpilot_cont_500_bf_scaffold_807_8
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6507..8201
DNA (1695bp) protein (565aa)
acyl-CoA dehydrogenase n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036542BA rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KHA64203.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_500_bf_scaffold_807_9
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8291..9061
DNA (771bp) protein (257aa)
TonB family C-terminal domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X1L5_9SPHN
DNA, contig: SP624 {ECO:0000313|EMBL:GAN13732.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
TonB-like protein
SCNpilot_cont_500_bf_scaffold_807_10
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9107..9457)
DNA (351bp) protein (117aa)
GntR family transcriptional regulator n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI000367B67D
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EZP50939.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
GntR family transcriptional regulator protein
SCNpilot_cont_500_bf_scaffold_807_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9495..10073)
DNA (579bp) protein (193aa)
Nitroreductase family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WU96_9SPHN
DNA, contig: SP620 {ECO:0000313|EMBL:GAN13528.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
putative nitroreductase
SCNpilot_cont_500_bf_scaffold_807_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10304..12115
DNA (1812bp) protein (604aa)
amino acid transporter n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD4F2 rbh
Sphingomonas taxi strain 30a NODE_17, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30014.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
amino acid/peptide transporter
SCNpilot_cont_500_bf_scaffold_807_13
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12171..12851
DNA (681bp) protein (227aa)
UPI0003D618AF related cluster n=1 Tax=unknown RepID=UPI0003D618AF
MFS transporter {ECO:0000313|EMBL:EXS68673.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
NnrU family protein
SCNpilot_cont_500_bf_scaffold_807_14
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12939..14591
DNA (1653bp) protein (551aa)
medium-chain-fatty-acid--CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
Medium-chain-fatty-acid--CoA ligase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAA4_9SPHN
Medium-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:KGB58650.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCNpilot_cont_500_bf_scaffold_807_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14549..16084
DNA (1536bp) protein (512aa)
Flavin-containing monooxygenase FMO n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WE35_9SPHN
Monooxygenase of flavin-binding family {ECO:0000313|EMBL:GAO56540.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
flavin-containing monooxygenase FMO
SCNpilot_cont_500_bf_scaffold_807_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16081..17319
DNA (1239bp) protein (413aa)
putative dipeptidase; K01273 membrane dipeptidase [EC:3.4.13.19] rbh
Zn-dependent dipeptidase, microsomal dipeptidase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GH09_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55189.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_cont_500_bf_scaffold_807_17
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17344..19026)
DNA (1683bp) protein (561aa)
PTS system N-acetylglucosamine-specific transporter subunit IIBC n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C469
PTS N-acetyl-D-glucosamine transporter {ECO:0000313|EMBL:KFD29529.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
PTS system subunit IIBC
SCNpilot_cont_500_bf_scaffold_807_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19023..21470)
DNA (2448bp) protein (816aa)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CMH3_SPHYA
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000313|EMBL:EKU73113.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit
SCNpilot_cont_500_bf_scaffold_807_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21467..23722)
DNA (2256bp) protein (752aa)
beta-hexosaminidase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C467
Beta-hexosaminidase {ECO:0000313|EMBL:KFD29531.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
beta-N-acetylhexosaminidase
SCNpilot_cont_500_bf_scaffold_807_20
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23824..26484)
DNA (2661bp) protein (887aa)
TonB-dependent receptor n=1 Tax=Sphingobium sp. AP49 RepID=J2WRS5_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:KEZ16993.1}; Flags: Precursor;; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
TonB-dependent receptor
SCNpilot_cont_500_bf_scaffold_807_21
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26682..27425
DNA (744bp) protein (248aa)
Transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2LBV7_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJK84951.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
GntR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_807_22
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27432..28463
DNA (1032bp) protein (344aa)
Putative phosphosugar isomerase n=1 Tax=Sphingobium sp. AP49 RepID=J2DPL1_9SPHN rbh
Putative phosphosugar isomerase {ECO:0000313|EMBL:EJK84952.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
glutamine-fructose-6-phosphate transaminase (isomerizing) rbh
SCNpilot_cont_500_bf_scaffold_807_23
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28463..29599
DNA (1137bp) protein (379aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Sphingobium sp. AP49 RepID=J2WPL0_9SPHN
N-acetylglucosamine-6-phosphate deacetylase
SCNpilot_cont_500_bf_scaffold_807_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29660..30634
DNA (975bp) protein (325aa)
polysaccharide deacetylase n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA10E
Polysaccharide deacetylase {ECO:0000313|EMBL:GAO55088.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
polysaccharide deacetylase
SCNpilot_cont_500_bf_scaffold_807_25
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30724..31239
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GS02_SPHAL
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABF53570.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_cont_500_bf_scaffold_807_26
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31295..31873
DNA (579bp) protein (193aa)
NADPH-dependent FMN reductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPV5_9SPHN
NADPH-dependent FMN reductase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_500_bf_scaffold_807_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31950..33128
DNA (1179bp) protein (393aa)
succinyl-CoA:(R)-citramalate CoA-transferase (EC:2.8.3.-); K07749 formyl-CoA transferase [EC:2.8.3.16]
Succinyl-CoA:(R)-citramalate CoA-transferase {ECO:0000313|EMBL:ABD24623.1}; EC=2.8.3.- {ECO:0000313|EMBL:ABD24623.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Succinyl-CoA:(R)-citramalate CoA-transferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GC00_NOVAD
SCNpilot_cont_500_bf_scaffold_807_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33125..34528
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
leuC; isopropylmalate isomerase large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WAA0_9SPHN rbh
SCNpilot_cont_500_bf_scaffold_807_29
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34648..35205)
DNA (558bp) protein (186aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
3-isopropylmalate dehydratase small subunit; K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
Isopropylmalate isomerase small subunit n=1 Tax=Sphingopyxis sp. MC1 RepID=N9VYP6_9SPHN
SCNpilot_cont_500_bf_scaffold_807_30
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35202..35624)
DNA (423bp) protein (141aa)
MarR family transcriptional regulator n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UPK4_9SPHN
Transcriptional regulator of marR family {ECO:0000313|EMBL:GAO55023.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
Displaying items 1-30 of 43 in total

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