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SCNpilot_cont_500_bf_scaffold_996

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_996_1
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..213
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5227E
Uncharacterized protein {ECO:0000313|EMBL:GAL99985.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_500_bf_scaffold_996_2
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(584..1018)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKT3_BEII9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB95122.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_500_bf_scaffold_996_3
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1134..1535
DNA (402bp) protein (134aa)
Transcriptional regulator, HxlR family n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IKT4_BEII9
HxlR family transcriptional regulator
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:ACB95123.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_500_bf_scaffold_996_4
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1910..3940
DNA (2031bp) protein (677aa)
conjugal transfer protein TraG n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248B1ED rbh
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4 rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_500_bf_scaffold_996_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3946..4350
DNA (405bp) protein (135aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJS3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE55605.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_996_6
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4347..5357
DNA (1011bp) protein (337aa)
conjugal transfer protein TrbB n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003613288
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_500_bf_scaffold_996_7
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5354..5683
DNA (330bp) protein (110aa)
Conjugal transfer protein trbc n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCP4_9SPHN
Conjugal transfer protein trbc {ECO:0000313|EMBL:EAT08846.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
SCNpilot_cont_500_bf_scaffold_996_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5680..5967
DNA (288bp) protein (96aa)
conjugal transfer protein TrbD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003703556
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KFD30078.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3
SCNpilot_cont_500_bf_scaffold_996_9
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5961..8393
DNA (2433bp) protein (811aa)
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D4A75
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_500_bf_scaffold_996_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8430..9179
DNA (750bp) protein (250aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH66_9SPHN
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:ENY82796.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbJ
SCNpilot_cont_500_bf_scaffold_996_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9306..10607
DNA (1302bp) protein (434aa)
Conjugal transfer protein TrbL n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWJ0_9SPHN
Conjugal transfer protein TrbL {ECO:0000313|EMBL:ENY82795.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_cont_500_bf_scaffold_996_12
BJP_08E140C01_10KDA_Sphingopyxis_64_55, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10609..11418
DNA (810bp) protein (270aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA4_9SPHN rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Tax=BJP_08E140C01_10KDA_Sphingopyxis_64_55
SCNpilot_cont_500_bf_scaffold_996_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11415..12407
DNA (993bp) protein (331aa)
Conjugal transfer protein TrbG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA3_9SPHN
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:BAK67273.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_500_bf_scaffold_996_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12404..13654
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036B162B
Conjugation TrbI family protein {ECO:0000313|EMBL:KHS45924.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_cont_500_bf_scaffold_996_15
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13656..13874
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LNJC394B00 RepID=V7FTF3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDX15201.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_996_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13871..14089
DNA (219bp) protein (73aa)
transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287F272
Transcriptional regulator {ECO:0000313|EMBL:AJP73686.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_996_17
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14745..15383)
DNA (639bp) protein (213aa)
Chloramphenicol acetyltransferase {ECO:0000313|EMBL:CCC96665.1}; EC=2.3.1.28 {ECO:0000313|EMBL:CCC96665.1};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Chloramphenicol acetyltransferase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGD0_AZOBR rbh
cat; chloramphenicol acetyltransferase rbh
SCNpilot_cont_500_bf_scaffold_996_18
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15592..16185)
DNA (594bp) protein (198aa)
methylated-DNA--protein-cysteine methyltransferase n=1 Tax=Rhizobium giardinii RepID=UPI000370117F
methylated-DNA--protein-cysteine methyltransferase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_cont_500_bf_scaffold_996_19
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16428..16832
DNA (405bp) protein (135aa)
ModE family transcriptional regulator n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000382DC12
ModE molybdate transport repressor domain-containing protein {ECO:0000313|EMBL:EKU73096.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
ModE family transcriptional regulator; K02019 molybdate transport system regulatory protein
SCNpilot_cont_500_bf_scaffold_996_20
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16714..17712)
DNA (999bp) protein (333aa)
Cytochrome-c peroxidase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S489_9SPHN rbh
cytochrome-c peroxidase rbh
Cytochrome-c peroxidase {ECO:0000313|EMBL:AGH50860.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_996_21
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17719..18249)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZVC3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL22619.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_996_22
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18347..20398
DNA (2052bp) protein (684aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I8G9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB07975.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
TonB-dependent receptor
SCNpilot_cont_500_bf_scaffold_996_23
Sphingopyxis sp. LC363, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20392..20961)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2PTY7_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KGB58035.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_996_24
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21092..22072
DNA (981bp) protein (327aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
purC2; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A1I5_9PROT
SCNpilot_cont_500_bf_scaffold_996_25
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22392..22751)
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CAC1C
Uncharacterized protein {ECO:0000313|EMBL:AHE57472.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_996_26
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22808..24262)
DNA (1455bp) protein (485aa)
FmtA-like protein n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UEG2_9RHOB rbh
FmtA-like protein {ECO:0000313|EMBL:AJA07891.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
FmtA-like protein
SCNpilot_cont_500_bf_scaffold_996_27
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24297..25337)
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2D5B0_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJK84909.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_996_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25403..27403)
DNA (2001bp) protein (667aa)
Beta-lactamase {ECO:0000313|EMBL:GAO53392.1}; EC=3.5.2.6 {ECO:0000313|EMBL:GAO53392.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
beta-lactamase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CA6BB rbh
beta-lactamase
SCNpilot_cont_500_bf_scaffold_996_29
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27605..28231
DNA (627bp) protein (209aa)
Putative transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2WPG9_9SPHN rbh
Putative transcriptional regulator {ECO:0000313|EMBL:EJK84913.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
transcriptional regulator, XRE family
Displaying 29 items

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