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SCNpilot_cont_500_bf_scaffold_188

Search features with annotation key words

Displaying items 1-30 of 212 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_188_1
Komagataeibacter rhaeticus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71..814)
DNA (744bp) protein (248aa)
Restriction endonuclease n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S699_9PROT
Restriction endonuclease {ECO:0000313|EMBL:KDU96506.1}; TaxID=1432055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter rhaeticus AF1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_188_2
unknown

Not on your lists

1244..1798
DNA (555bp) protein (185aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_188_3
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2237..2836)
DNA (600bp) protein (200aa)
TetR family transcriptional regulator n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TTW7_TISMK
nemR; TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:AFK56205.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_188_4
unknown

Not on your lists

comp(2853..3281)
DNA (429bp) protein (143aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_188_5
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3278..3721)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000377EE86
Uncharacterized protein {ECO:0000313|EMBL:EMG55224.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
SCNpilot_cont_500_bf_scaffold_188_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4237..4968
DNA (732bp) protein (244aa)
Transcriptional regulator, LuxR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216V3_RHOPB
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABD87583.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_500_bf_scaffold_188_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4958..5617)
DNA (660bp) protein (220aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
N-acyl-L-homoserine lactone synthetase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0H9W5_RHILT
raiI; autoinducer synthesis protein
SCNpilot_cont_500_bf_scaffold_188_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5798..7861)
DNA (2064bp) protein (688aa)
Fatty acid oxidation complex subunit alpha {ECO:0000313|EMBL:EYR78765.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EYR78765.1};; EC=5.1.2.3 {ECO:0000313|EMBL:EYR78765.1};; EC=5.3.3.8 {ECO:0000313|EMBL:EYR78765.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fadB1; fatty acid oxidation complex subunit alpha (EC:4.2.1.17 5.1.2.3) rbh
Fatty acid oxidation complex subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYB4_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_188_9
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7956..8744
DNA (789bp) protein (263aa)
Enoyl-CoA hydratase PaaB n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSL2_RHITR rbh
paaB; enoyl-CoA hydratase PaaB rbh
Enoyl-CoA hydratase PaaB {ECO:0000313|EMBL:AGB74293.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8741..9184
DNA (444bp) protein (148aa)
Phenylacetic acid degradation protein PaaD n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LST5_RHITR
paaD; phenylacetic acid degradation protein PaaD
Phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:AGB74292.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_11
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9227..10537
DNA (1311bp) protein (437aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Phenylacetate-CoA ligase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUA7_RHITR rbh
paaF; phenylacetate-CoA ligase rbh
SCNpilot_cont_500_bf_scaffold_188_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10641..11237
DNA (597bp) protein (199aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVY5_RHITR rbh
transcriptional regulator, TetR family rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGB74290.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11247..11861)
DNA (615bp) protein (205aa)
Phenylacetic acid degradation protein PaaY n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVV9_RHITR rbh
paaY; phenylacetic acid degradation protein PaaY rbh
Phenylacetic acid degradation protein PaaY {ECO:0000313|EMBL:AGB74289.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11862..12380)
DNA (519bp) protein (173aa)
Thioesterase superfamily protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSK7_RHITR rbh
thioesterase superfamily protein rbh
Thioesterase superfamily protein {ECO:0000313|EMBL:AGB74288.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_15
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12385..14442)
DNA (2058bp) protein (686aa)
Phenylacetic acid degradation protein PaaN n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSS9_RHITR rbh
Phenylacetic acid degradation protein PaaN {ECO:0000313|EMBL:AGB74287.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
paaN; phenylacetic acid degradation protein PaaN rbh
SCNpilot_cont_500_bf_scaffold_188_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14510..15265)
DNA (756bp) protein (252aa)
Phenylacetic acid catabolic family protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUA2_RHITR rbh
phenylacetic acid catabolic family protein rbh
Phenylacetic acid catabolic family protein {ECO:0000313|EMBL:AGB74286.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15294..16370)
DNA (1077bp) protein (359aa)
Phenylacetate-CoA oxygenase/reductase, PaaK subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVX9_RHITR rbh
paaK; phenylacetate-CoA oxygenase/reductase, PaaK subunit rbh
Phenylacetate-CoA oxygenase/reductase, PaaK subunit {ECO:0000313|EMBL:AGB74285.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16391..16915)
DNA (525bp) protein (175aa)
Phenylacetate-CoA oxygenase, PaaJ subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVV7_RHITR rbh
paaJ; phenylacetate-CoA oxygenase, PaaJ subunit rbh
Phenylacetate-CoA oxygenase, PaaJ subunit {ECO:0000313|EMBL:AGB74284.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16925..17707)
DNA (783bp) protein (261aa)
Phenylacetate-CoA oxygenase, PaaI subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSK1_RHITR rbh
paaI; phenylacetate-CoA oxygenase, PaaI subunit rbh
Phenylacetate-CoA oxygenase, PaaI subunit {ECO:0000313|EMBL:AGB74283.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17707..17991)
DNA (285bp) protein (95aa)
1,2-phenylacetyl-CoA epoxidase, subunit B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS86_9RHIZ
1,2-phenylacetyl-CoA epoxidase, subunit B {ECO:0000313|EMBL:EYR78748.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
paaH; phenylacetate-CoA oxygenase, PaaH subunit
SCNpilot_cont_500_bf_scaffold_188_21
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18022..19026)
DNA (1005bp) protein (335aa)
Phenylacetate-CoA oxygenase, PaaG subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LU96_RHITR rbh
paaG; phenylacetate-CoA oxygenase, PaaG subunit rbh
Phenylacetate-CoA oxygenase, PaaG subunit {ECO:0000313|EMBL:AGB74281.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19326..20216)
DNA (891bp) protein (297aa)
Phenylacetic acid degradation operon negative regulatory protein PaaX n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVX4_RHITR rbh
paaX; phenylacetic acid degradation operon negative regulatory protein PaaX rbh
Phenylacetic acid degradation operon negative regulatory protein PaaX {ECO:0000313|EMBL:AGB74280.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20302..20781)
DNA (480bp) protein (160aa)
Glutamate uptake regulatory protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVV2_RHITR rbh
glutamate uptake regulatory protein rbh
Glutamate uptake regulatory protein {ECO:0000313|EMBL:AGB74279.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20901..22979
DNA (2079bp) protein (693aa)
Putative transketolase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSJ6_RHITR rbh
Putative transketolase {ECO:0000313|EMBL:AGB74278.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
putative transketolase rbh
SCNpilot_cont_500_bf_scaffold_188_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22982..24199
DNA (1218bp) protein (406aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2)(Dihydrolipoamide succinyltransferase component of 2-oxoglutaratedehydrogenase complex) n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LSR9_RHITR rbh
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2)(dihydrolipoamide succinyltransferase component of 2-oxoglutaratedehydrogenase complex) rbh
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex (E2)(Dihydrolipoamide succinyltransferase component of 2-oxoglutaratedehydrogenase complex) {ECO:0000313|EMBL:AGB74277.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24367..25557
DNA (1191bp) protein (397aa)
Aspartate aminotransferase (Transaminase A) n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LU90_RHITR rbh
aspartate aminotransferase (transaminase A) rbh
Aspartate aminotransferase (Transaminase A) {ECO:0000313|EMBL:AGB74276.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_188_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25618..27273)
DNA (1656bp) protein (552aa)
Putative sulfatase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NA21_RHOPA rbh
sulfatase rbh
Putative sulfatase {ECO:0000313|EMBL:CAE26808.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_500_bf_scaffold_188_28
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27277..28050)
DNA (774bp) protein (258aa)
Putative ABC transporter membrane protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAM9_9RHOB
Putative ABC transporter membrane protein {ECO:0000313|EMBL:EAQ14970.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
nitrate/sulfonate/bicarbonate ABC transporter permease
SCNpilot_cont_500_bf_scaffold_188_29
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28047..28826)
DNA (780bp) protein (260aa)
Putative taurine ABC transport system permease protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN0_9RHOB
Putative taurine ABC transport system permease protein {ECO:0000313|EMBL:EAQ14971.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
binding protein-dependent transport system, inner membrane component
SCNpilot_cont_500_bf_scaffold_188_30
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28829..29629)
DNA (801bp) protein (267aa)
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component-like protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN2_9RHOB rbh
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component-like protein {ECO:0000313|EMBL:EAQ14973.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter ATP-binding protein; K02049 NitT/TauT family transport system ATP-binding protein
Displaying items 1-30 of 212 in total

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