ggKbase home page

SCNpilot_cont_500_bf_scaffold_477

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_477_1
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(871..2148)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV34_RHITR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB74005.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_2
unknown

Not on your lists

2234..2476
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_477_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3221..3730
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRS4_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74008.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_4
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3733..4398
DNA (666bp) protein (222aa)
Transcriptional regulatory protein QseB n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV18_RHITR rbh
transcriptional regulatory protein QseB rbh
Transcriptional regulatory protein QseB {ECO:0000313|EMBL:AGB74009.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4452..5750
DNA (1299bp) protein (433aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Two component sensor kinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV37_RHITR rbh
two component sensor kinase rbh
SCNpilot_cont_500_bf_scaffold_477_6
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6000..7166)
DNA (1167bp) protein (389aa)
Siderophore-interacting protein n=1 Tax=Rhizobium sp. AP16 RepID=J2DYF4_9RHIZ rbh
Siderophore-interacting protein {ECO:0000313|EMBL:KEA07736.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
viuB; siderophore-interacting protein rbh
SCNpilot_cont_500_bf_scaffold_477_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7151..8272)
DNA (1122bp) protein (374aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Rhizobium sp. AP16 RepID=J2WYV7_9RHIZ rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEA07737.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
solute-binding periplasmic protein of iron/siderophore ABC transporter rbh
SCNpilot_cont_500_bf_scaffold_477_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8283..10433)
DNA (2151bp) protein (717aa)
TonB-dependent siderophore receptor n=1 Tax=Rhizobium sp. AP16 RepID=J2DEA6_9RHIZ rbh
Ligand-gated channel {ECO:0000313|EMBL:KEA07738.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
fhuA2; ferrichrome outer membrane transporter; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_500_bf_scaffold_477_9
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10579..11244
DNA (666bp) protein (222aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2X148_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EJK88310.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
putative transcriptional regulator, TetR family
SCNpilot_cont_500_bf_scaffold_477_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11334..12101
DNA (768bp) protein (256aa)
4'-phosphopantetheinyl transferase entD, Holo-[acyl-carrier protein] synthase, alternative (EC:2.7.8.7); K02362 enterobactin synthetase component D [EC:2.7.8.-]
UPI0003D014CD related cluster n=1 Tax=unknown RepID=UPI0003D014CD
Uncharacterized protein {ECO:0000313|EMBL:ESZ05856.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_cont_500_bf_scaffold_477_11
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12843..14327
DNA (1485bp) protein (495aa)
UPI0003D0088C related cluster n=1 Tax=unknown RepID=UPI0003D0088C
MFS transporter {ECO:0000313|EMBL:KDP73369.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
major facilitator superfamily protein
SCNpilot_cont_500_bf_scaffold_477_12
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15354..16463
DNA (1110bp) protein (370aa)
Plasmid partitioning protein RepA n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LWQ7_RHITR rbh
repAc; plasmid partitioning protein RepA rbh
Plasmid partitioning protein RepA {ECO:0000313|EMBL:AGB75718.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16460..17500
DNA (1041bp) protein (347aa)
Plasmid partitioning protein RepB n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0M012_RHITR rbh
repBc; plasmid partitioning protein RepB rbh
Plasmid partitioning protein RepB {ECO:0000313|EMBL:AGB75719.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17688..18911
DNA (1224bp) protein (408aa)
Replication protein C n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0M058_RHITR rbh
repCc; replication protein C rbh
Replication protein C {ECO:0000313|EMBL:AGB75720.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19083..19253)
DNA (171bp) protein (57aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JEF0_AGRRK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM26371.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_477_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19941..20468)
DNA (528bp) protein (176aa)
hydrolase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037F7073
Hydrolase {ECO:0000313|EMBL:AHF84596.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_477_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20614..21231)
DNA (618bp) protein (206aa)
Lysine exporter protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHY2_RHITR rbh
lysine exporter protein rbh
Lysine exporter protein {ECO:0000313|EMBL:AGB70326.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_18
unknown

Not on your lists

21409..21753
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_477_19
Granulibacter bethesdensis, Granulibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21782..22666)
DNA (885bp) protein (295aa)
beta-lactamase (EC:3.5.2.6); K01467 beta-lactamase [EC:3.5.2.6] rbh
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; TaxID=391165 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Granulibacter.;" source="Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1).;"
Beta-lactamase n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BSY1_GRABC rbh
SCNpilot_cont_500_bf_scaffold_477_20
unknown

Not on your lists

comp(22868..23131)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_477_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24008..24925)
DNA (918bp) protein (306aa)
DNA resolvase protein n=2 Tax=Rhizobium RepID=L0LPY7_RHITR rbh
DNA resolvase protein rbh
DNA resolvase protein {ECO:0000313|EMBL:ENN86621.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_500_bf_scaffold_477_22
unknown

Not on your lists

25422..25790
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_477_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26005..27519)
DNA (1515bp) protein (505aa)
Putative peptide ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS24_RHITR rbh
putative peptide ABC transporter, substrate-binding protein rbh
Putative peptide ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB74078.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27539..29236)
DNA (1698bp) protein (566aa)
Putative peptide ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVB1_RHITR rbh
putative peptide ABC transporter, ATP-binding protein rbh
Putative peptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB74079.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29233..30084)
DNA (852bp) protein (284aa)
Putative peptide ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVD5_RHITR rbh
putative peptide ABC transporter, permease protein rbh
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGB74080.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30081..31019)
DNA (939bp) protein (313aa)
Putative peptide ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTR7_RHITR rbh
putative peptide ABC transporter, permease protein rbh
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGB74081.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31071..31961)
DNA (891bp) protein (297aa)
Proline iminopeptidase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS94_RHITR rbh
proline iminopeptidase protein rbh
Proline iminopeptidase protein {ECO:0000313|EMBL:AGB74082.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_28
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32093..32875
DNA (783bp) protein (261aa)
Transcriptional regulator LuxR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LS30_RHITR rbh
transcriptional regulator LuxR family rbh
Transcriptional regulator LuxR family {ECO:0000313|EMBL:AGB74083.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_29
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32942..33844
DNA (903bp) protein (301aa)
Proline iminopeptidase protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVB6_RHITR rbh
proline iminopeptidase protein rbh
Proline iminopeptidase protein {ECO:0000313|EMBL:AGB74084.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_477_30
unknown

Not on your lists

33964..34254
DNA (291bp) protein (97aa)

This feature has no annotations

Displaying items 1-30 of 48 in total

View Taxonomy