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SCNpilot_cont_500_bf_scaffold_583

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_583_1
unknown

Not on your lists

comp(1..117)
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_583_2
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(715..1596)
DNA (882bp) protein (294aa)
AraQ n=1 Tax=Rhizobium leguminosarum RepID=UPI00036640C5 rbh
Putative sugar ABC transporter permease protein {ECO:0000313|EMBL:KFC69723.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
ABC transporter permease; K02026 multiple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_583_3
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1593..2486)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000370A4E7 rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KFL32673.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter; K02025 multiple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_583_4
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2552..3811)
DNA (1260bp) protein (420aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037FB562 rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CDX24631.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
extracellular solute-binding protein rbh
SCNpilot_cont_500_bf_scaffold_583_5
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3943..6684)
DNA (2742bp) protein (914aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003683919 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFL28222.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
putative glycosyl hydrolase rbh
SCNpilot_cont_500_bf_scaffold_583_6
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6871..7866
DNA (996bp) protein (332aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00037849F8 rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:CDP50039.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
transcriptional regulator LacI family
SCNpilot_cont_500_bf_scaffold_583_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7997..8773)
DNA (777bp) protein (259aa)
short chain dehydrogenase (EC:1.1.1.100) rbh
short-chain dehydrogenase n=1 Tax=Aureimonas ureilytica RepID=UPI00036E0C92 rbh
Uncharacterized protein {ECO:0000313|EMBL:EJC75865.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_cont_500_bf_scaffold_583_8
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9800..11425)
DNA (1626bp) protein (542aa)
Choline dehydrogenase protein {ECO:0000313|EMBL:AJD44296.1}; EC=1.1.99.1 {ECO:0000313|EMBL:AJD44296.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
Choline dehydrogenase (EC:1.1.99.1); K00108 choline dehydrogenase [EC:1.1.99.1] rbh
sorbose dehydrogenase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000362A8E4 rbh
SCNpilot_cont_500_bf_scaffold_583_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11447..12337)
DNA (891bp) protein (297aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003638F24 rbh
Aldose 1-epimerase rbh
Aldose 1-epimerase {ECO:0000313|EMBL:ACS61001.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_500_bf_scaffold_583_10
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12346..13350)
DNA (1005bp) protein (335aa)
sugar ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003700CEF rbh
Sugar ABC transporter permease protein {ECO:0000313|EMBL:AJD44294.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_583_11
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13362..14891)
DNA (1530bp) protein (510aa)
ABC transporter; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
heme ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035CD53E rbh
ABC transporter {ECO:0000313|EMBL:EPE94217.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
SCNpilot_cont_500_bf_scaffold_583_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14964..15944)
DNA (981bp) protein (327aa)
sugar ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037CD16D rbh
periplasmic binding protein/LacI transcriptional regulator; K02058 simple sugar transport system substrate-binding protein rbh
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ACS61004.1}; Flags: Precursor;; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_cont_500_bf_scaffold_583_13
unknown

Not on your lists

comp(15959..16138)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_583_14
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16240..17013
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037794C0 rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EPE94219.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
GntR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_583_15
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17116..18396)
DNA (1281bp) protein (427aa)
LolC/E family lipoprotein releasing system, transmembrane protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C214_9RHIZ
LolC/E family lipoprotein releasing system, transmembrane protein {ECO:0000313|EMBL:EIM75866.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
LolC/E family lipoprotein releasing system, transmembrane protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_cont_500_bf_scaffold_583_16
unknown

Not on your lists

comp(18393..18710)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_583_17
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18897..19466)
DNA (570bp) protein (190aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
hypothetical protein n=1 Tax=Gluconacetobacter europaeus RepID=UPI0002D32D72
phenylacrylic acid decarboxylase
SCNpilot_cont_500_bf_scaffold_583_18
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19478..20851)
DNA (1374bp) protein (458aa)
4-hydroxybenzoate decarboxylase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW63_RHITR
3-octaprenyl-4-hydroxybenzoate carboxy-lyase {ECO:0000313|EMBL:KJC56900.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
4-hydroxybenzoate decarboxylase
SCNpilot_cont_500_bf_scaffold_583_19

Not on your lists

comp(20861..22375)
DNA (1515bp) protein (505aa)
Histidine ammonia-lyase {ECO:0000313|EMBL:EKD61627.1}; EC=4.3.1.3 {ECO:0000313|EMBL:EKD61627.1};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative histidine ammonia-lyase; K01745 histidine ammonia-lyase [EC:4.3.1.3]
Histidine ammonia-lyase n=1 Tax=uncultured bacterium RepID=K2AJ08_9BACT
SCNpilot_cont_500_bf_scaffold_583_20
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22469..23716
DNA (1248bp) protein (416aa)
Transcriptional regulator, LysR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2H2_9RHIZ
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AHI24033.1}; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
transcriptional regulator, LysR family
SCNpilot_cont_500_bf_scaffold_583_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23930..25546
DNA (1617bp) protein (539aa)
Alcohol dehydrogenase {ECO:0000313|EMBL:EYR81282.1}; EC=1.1.99.- {ECO:0000313|EMBL:EYR81282.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Alcohol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ64_9RHIZ rbh
GMC family oxidoreductase rbh
SCNpilot_cont_500_bf_scaffold_583_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25580..27082)
DNA (1503bp) protein (501aa)
Transcriptional regulator, GntR family with aminotransferase domain-containing protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5V3_9RHIZ rbh
Putative rhizopine catabolism regulatory protein MocR {ECO:0000313|EMBL:EYR81283.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
GntR family transcriptional regulator/MocR family aminotransferase
SCNpilot_cont_500_bf_scaffold_583_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27264..28370
DNA (1107bp) protein (369aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWN0_9RHIZ rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:EYR81284.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
racemase rbh
SCNpilot_cont_500_bf_scaffold_583_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28372..29862
DNA (1491bp) protein (497aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:EYR81285.1}; EC=1.2.99.3 {ECO:0000313|EMBL:EYR81285.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
betaine-aldehyde dehydrogenase (EC:1.2.1.8) rbh
Aldehyde dehydrogenase family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NXN1_9RHOB rbh
SCNpilot_cont_500_bf_scaffold_583_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30033..31112
DNA (1080bp) protein (360aa)
Spermidine/putrescine-binding periplasmic protein 2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXM8_9RHIZ rbh
Spermidine/putrescine-binding periplasmic protein 2 {ECO:0000313|EMBL:EYR81286.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine-binding, periplasmic protein rbh
SCNpilot_cont_500_bf_scaffold_583_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31280..32353
DNA (1074bp) protein (358aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000313|EMBL:EYR81287.1}; EC=3.6.3.31 {ECO:0000313|EMBL:EYR81287.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine transport system, ATP-binding protein (EC:3.6.3.31) rbh
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGJ7_9RHIZ rbh
SCNpilot_cont_500_bf_scaffold_583_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32359..33228
DNA (870bp) protein (290aa)
Spermidine/putrescine transport system permease protein PotB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWM9_9RHIZ rbh
Spermidine/putrescine transport system permease protein PotB {ECO:0000313|EMBL:EYR81288.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine transport system, permease protein rbh
SCNpilot_cont_500_bf_scaffold_583_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33231..34097
DNA (867bp) protein (289aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5I9_9RHIZ rbh
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR81289.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
spermidine/putrescine transport system, permease protein rbh
SCNpilot_cont_500_bf_scaffold_583_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34344..35660)
DNA (1317bp) protein (439aa)
Aminotransferase class-III n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UXY4_9RHIZ rbh
Aminotransferase class-III {ECO:0000313|EMBL:ENN86525.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
aminotransferase class-III rbh
SCNpilot_cont_500_bf_scaffold_583_30
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35657..36478)
DNA (822bp) protein (274aa)
N-formylglutamate amidohydrolase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X7I4_OCHA4
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ABS17188.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Displaying items 1-30 of 48 in total

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