ggKbase home page

SCNpilot_cont_500_bf_scaffold_1031

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1031_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..185
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI00037C8628
Uncharacterized protein {ECO:0000313|EMBL:EJC75257.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1031_2
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

220..600
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI0003712446
Uncharacterized protein {ECO:0000313|EMBL:EPE96668.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1031_3
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

695..970
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KDV6_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC75259.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1031_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1111..1290
DNA (180bp) protein (60aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI0002D34D7F
Signal transduction histidine kinase {ECO:0000313|EMBL:CDX60348.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_500_bf_scaffold_1031_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1399..1653
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AEV5_RHIET
Type II toxin-antitoxin system antitoxin Phd/YefM family protein {ECO:0000313|EMBL:AIC31670.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
prevent-host-death family protein
SCNpilot_cont_500_bf_scaffold_1031_6
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1650..2072
DNA (423bp) protein (141aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Ribonuclease VapC n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW88_RHITR
putative plasmid stabilization protein
SCNpilot_cont_500_bf_scaffold_1031_7
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2076..2441
DNA (366bp) protein (122aa)
Natural resistance-associated macrophage protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LWM9_RHITR
natural resistance-associated macrophage protein
Natural resistance-associated macrophage protein {ECO:0000313|EMBL:AGB75683.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_8
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2528..2704
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LK49_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB71788.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_9
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2909..3430
DNA (522bp) protein (174aa)
Transposase IS204/IS1001/IS1096/IS1165 family protein (Fragment) n=1 Tax=Rhizobium sp. Pop5 RepID=K0VBD7_9RHIZ
Transposase IS204/IS1001/IS1096/IS1165 family protein {ECO:0000313|EMBL:EJZ16407.1}; Flags: Fragment;; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
putative ISL3 family transposase
SCNpilot_cont_500_bf_scaffold_1031_10
Photorhabdus luminescens, Photorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3466..4218)
DNA (753bp) protein (251aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI000371037B
Membrane protein {ECO:0000313|EMBL:KGM27287.1}; TaxID=29488 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus.;" source="Photorhabdus luminescens (Xenorhabdus luminescens).;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1031_11
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5052..5990)
DNA (939bp) protein (313aa)
AgaE n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q987J3_RHILO
agaE protein, conversion of agropinic acid to mannopinic acid
AgaE {ECO:0000313|EMBL:BAB53210.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_cont_500_bf_scaffold_1031_12
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6330..7385)
DNA (1056bp) protein (352aa)
Putative agmatinase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U2B6_9RHIZ rbh
Putative agmatinase {ECO:0000313|EMBL:ENN86784.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative agmatinase rbh
SCNpilot_cont_500_bf_scaffold_1031_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7482..8645
DNA (1164bp) protein (388aa)
Aminotransferase class I and II n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXB6_RHITR rbh
aminotransferase class I and II rbh
Aminotransferase class I and II {ECO:0000313|EMBL:AGB75351.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_14
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8622..9161)
DNA (540bp) protein (180aa)
Actinorhodin polyketide dimerase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LZ17_RHITR rbh
actinorhodin polyketide dimerase rbh
Actinorhodin polyketide dimerase {ECO:0000313|EMBL:AGB75350.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9173..10513)
DNA (1341bp) protein (447aa)
Putative nitrilotriacetate monooxygenase component A n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6W6_9RHIZ rbh
Putative nitrilotriacetate monooxygenase component A {ECO:0000313|EMBL:ENN86782.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
nitrilotriacetate monooxygenase component A rbh
SCNpilot_cont_500_bf_scaffold_1031_16
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10625..11566)
DNA (942bp) protein (314aa)
Transcriptional regulator, LysR family system transcriptional activator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V185_9RHIZ rbh
Transcriptional regulator, LysR family system transcriptional activator {ECO:0000313|EMBL:ENN86781.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_1031_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11563..12306)
DNA (744bp) protein (248aa)
Transcriptional regulator, histidine utilization repressor, GntR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LVT0_RHITR rbh
transcriptional regulator, histidine utilization repressor, GntR family rbh
Transcriptional regulator, histidine utilization repressor, GntR family {ECO:0000313|EMBL:AGB75347.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12536..13363
DNA (828bp) protein (276aa)
Putative polar amino acid ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXA9_RHITR rbh
putative polar amino acid ABC transporter, substrate-binding protein rbh
Putative polar amino acid ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB75346.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_19
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13461..14102
DNA (642bp) protein (214aa)
Putative polar amino acid ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LZ12_RHITR rbh
putative polar amino acid ABC transporter, permease protein rbh
Putative polar amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGB75345.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_20
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14099..14767
DNA (669bp) protein (223aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6W1_9RHIZ rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ENN86777.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
polar amino acid ABC transporter inner membrane protein rbh
SCNpilot_cont_500_bf_scaffold_1031_21
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14764..15555
DNA (792bp) protein (264aa)
Amino acid ABC transporter, ATP-binding protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V181_9RHIZ rbh
Amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ENN86776.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative polar amino acid ABC transporter, ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1031_22
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16093..16770)
DNA (678bp) protein (226aa)
Transcriptional regulator, MarR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW98_RHITR rbh
transcriptional regulator, MarR family rbh
Transcriptional regulator, MarR family {ECO:0000313|EMBL:AGB74986.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_23
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16730..17530)
DNA (801bp) protein (267aa)
ABC transporter, ATP-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXY0_RHITR rbh
ABC transporter, ATP-binding protein rbh
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:AGB74985.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_24
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17527..18459)
DNA (933bp) protein (311aa)
ABC transporter, permease protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXT9_RHITR rbh
ABC transporter, permease protein rbh
ABC transporter, permease protein {ECO:0000313|EMBL:AGB74984.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_25
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18456..19436)
DNA (981bp) protein (327aa)
ABC transporter, substrate-binding protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUL9_RHITR rbh
ABC transporter, substrate-binding protein rbh
ABC transporter, substrate-binding protein {ECO:0000313|EMBL:AGB74983.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_26
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19474..20694)
DNA (1221bp) protein (407aa)
L-lactate dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUS3_RHITR rbh
L-lactate dehydrogenase rbh
L-lactate dehydrogenase {ECO:0000313|EMBL:AGB74982.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_27
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20731..22161)
DNA (1431bp) protein (477aa)
D-lactate dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LW94_RHITR rbh
D-lactate dehydrogenase rbh
D-lactate dehydrogenase {ECO:0000313|EMBL:AGB74981.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_28
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22158..23192)
DNA (1035bp) protein (345aa)
Prephenate dehydratase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXX3_RHITR rbh
prephenate dehydratase rbh
Prephenate dehydratase {ECO:0000313|EMBL:AGB74980.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_29
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23284..24084)
DNA (801bp) protein (267aa)
Putative methyltransferase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LXT6_RHITR rbh
putative methyltransferase rbh
Putative methyltransferase {ECO:0000313|EMBL:AGB74979.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_cont_500_bf_scaffold_1031_30
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24427..25290)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LUL4_RHITR rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGB74978.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Displaying items 1-30 of 36 in total

View Taxonomy