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SCNpilot_cont_500_bf_scaffold_1425

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_1425_1
Vibrio coralliilyticus, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125..562
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Vibrio coralliilyticus OCN008 RepID=U0ETV3_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:AIW21134.1}; TaxID=190893 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio coralliilyticus.;"
SCNpilot_cont_500_bf_scaffold_1425_2
Brucella sp. F5/99, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(749..913)
DNA (165bp) protein (55aa)
Uncharacterized protein n=4 Tax=Brucella RepID=N7QBS1_9RHIZ
Transposase {ECO:0000313|EMBL:EEY24697.1}; TaxID=437701 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. F5/99.;"
putative IS3 family transposase, IS51 group, OrfB
SCNpilot_cont_500_bf_scaffold_1425_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1082..2068)
DNA (987bp) protein (329aa)
Putative transcriptional regulator protein, AraC family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UEJ9_9RHIZ rbh
Putative transcriptional regulator protein, AraC family {ECO:0000313|EMBL:ENN88573.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
AraC family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_1425_4
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2095..3093)
DNA (999bp) protein (333aa)
UPI0003CE7F4C related cluster n=1 Tax=unknown RepID=UPI0003CE7F4C rbh
Hydroxyproline-2-epimerase {ECO:0000313|EMBL:ESY73427.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
hydroxyproline-2-epimerase rbh
SCNpilot_cont_500_bf_scaffold_1425_5
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3212..4069)
DNA (858bp) protein (286aa)
UPI0003CE168F related cluster n=1 Tax=unknown RepID=UPI0003CE168F rbh
ABC transporter permease {ECO:0000313|EMBL:ESY73426.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
prow5; glycine betaine/L-proline transport system permease protein proW; K02001 glycine betaine/proline transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1425_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4066..4914)
DNA (849bp) protein (283aa)
Glycine betaine/L-proline ABC transporter, permease {ECO:0000313|EMBL:CCE99555.1}; EC=3.6.3.32 {ECO:0000313|EMBL:CCE99555.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Glycine betaine/L-proline ABC transporter,permease protein, putative n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AES3_RHIFH rbh
prow3; glycine betaine/L-proline ABC transporter,permease protein; K02001 glycine betaine/proline transport system permease protein rbh
SCNpilot_cont_500_bf_scaffold_1425_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4929..6020)
DNA (1092bp) protein (364aa)
prov3; putative glycine betaine/proline ABC transporter (ATP-binding protein); K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32] rbh
ABC-type proline/glycine betaine transport system (ATP-binding protein) {ECO:0000313|EMBL:CCE99554.1}; EC=3.6.3.32 {ECO:0000313|EMBL:CCE99554.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Putative glycine betaine/proline ABC transporter (ATP-binding protein) n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AES2_RHIFH rbh
SCNpilot_cont_500_bf_scaffold_1425_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6108..6959)
DNA (852bp) protein (284aa)
ABC transporter, substrate binding protein (Glycine-betaine) n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XSS4_RHIRD rbh
ABC transporter substrate binding protein (Glycine-betaine) {ECO:0000313|EMBL:EGP54239.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
glycine-betaine ABC transporter substrate-binding protein; K02002 glycine betaine/proline transport system substrate-binding protein rbh
SCNpilot_cont_500_bf_scaffold_1425_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7039..8385)
DNA (1347bp) protein (449aa)
Oxidoreductase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JHU1_AGRRK rbh
oxidoreductase rbh
Oxidoreductase protein {ECO:0000313|EMBL:ACM29483.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_500_bf_scaffold_1425_10
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8382..9899)
DNA (1518bp) protein (506aa)
putative aldehyde dehydrogenase; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-] rbh
aldehyde dehydrogenase n=1 Tax=Rhizobium leguminosarum RepID=UPI000371828A rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:EJZ18926.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_cont_500_bf_scaffold_1425_11
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9892..10803)
DNA (912bp) protein (304aa)
dihydrodipicolinate synthase protein (EC:4.3.3.7) rbh
Dihydrodipicolinate synthase protein {ECO:0000313|EMBL:AGS26175.1}; EC=4.3.3.7 {ECO:0000313|EMBL:AGS26175.1};; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
Dihydrodipicolinate synthase protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S8F0_RHIET rbh
SCNpilot_cont_500_bf_scaffold_1425_12
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10800..11510)
DNA (711bp) protein (237aa)
Uncharacterized HTH-type transcriptional regulator ydfH n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AER7_RHIFH rbh
HTH-type transcriptional regulator ydfH rbh
Regulatory protein, GntR family {ECO:0000313|EMBL:CCE99549.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_500_bf_scaffold_1425_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12067..12861)
DNA (795bp) protein (265aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Putative pyrroline-5-carboxylate reductase protein n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2JYN7_RHIEC rbh
putative pyrroline-5-carboxylate reductase protein rbh
SCNpilot_cont_500_bf_scaffold_1425_14
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12872..13504)
DNA (633bp) protein (211aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF122 RepID=J3BGU2_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL50459.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
TetR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_1425_15
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13651..15687
DNA (2037bp) protein (679aa)
NADH:flavin oxidoreductase n=1 Tax=Rhizobium sp. CF122 RepID=J2IP24_9RHIZ rbh
NADH:flavin oxidoreductase {ECO:0000313|EMBL:EJL50458.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
flavoprotein oxidoreductase
SCNpilot_cont_500_bf_scaffold_1425_16
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15735..16331
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2RCM4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL50457.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_1425_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16582..17154
DNA (573bp) protein (191aa)
glutathione-dependent formaldehyde-activating enzyme; K03396 S-(hydroxymethyl)glutathione synthase [EC:4.4.1.22]
Glutathione-dependent formaldehyde-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00723}; EC=4.4.1.22 {ECO:0000256|HAMAP-Rule:MF_00723};; S-(hydroxymethyl)glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00723}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Glutathione-dependent formaldehyde-activating enzyme n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2JYP6_RHIEC
SCNpilot_cont_500_bf_scaffold_1425_18
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17461..18549)
DNA (1089bp) protein (363aa)
Flavodoxin reductase family protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SSE4_9RHIZ rbh
Flavodoxin reductase family protein {ECO:0000313|EMBL:CDM62678.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
putative FAD/NAD/ferredoxin protein
SCNpilot_cont_500_bf_scaffold_1425_19
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18539..19792)
DNA (1254bp) protein (418aa)
Putative Rieske n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AH38_RHIET rbh
Rieske {ECO:0000313|EMBL:KEC70045.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
putative Rieske [2Fe-2S] dioxygenase; K00479 Rieske 2Fe-2S family protein rbh
SCNpilot_cont_500_bf_scaffold_1425_20
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19902..20789
DNA (888bp) protein (296aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J1T8W4_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EJJ28171.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_1425_21
unknown

Not on your lists

comp(20702..20968)
DNA (267bp) protein (89aa)

This feature has no annotations

Displaying 21 items

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