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SCNpilot_cont_500_bf_scaffold_9_55

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 54160..54639

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LLL1_RHITR similarity UNIREF
DB: UNIREF100
  • Identity: 88.1
  • Coverage: 159.0
  • Bit_score: 280
  • Evalue 7.80e-73
RNA polymerase sigma factor protein similarity KEGG
DB: KEGG
  • Identity: 88.1
  • Coverage: 159.0
  • Bit_score: 280
  • Evalue 2.40e-73
RNA polymerase sigma factor protein {ECO:0000313|EMBL:AGB71576.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.1
  • Coverage: 159.0
  • Bit_score: 280
  • Evalue 1.10e-72

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Taxonomy

Rhizobium tropici → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
GTGCTGGCGCTCCTCCCCTCGCTGCGGCGTTATTCGCGCAGCCTCACCCGCTCGGATGCCGATGGCGAGGACCTGCTTCAGGATTGTGTCGAGAAGGTTTTAATCCGGCGCAGCCAATGGCGTGGGCTGAACCTGCGCGGTTGGGTCCTGACCATCATGACCAATCTTTACCGCAACGGGCGGCGCCAGCAAGGCGGCCGCAGTTTCGTCGATATCGATGATAACAGCCATCTGCCAGCAGCCGAGGAGAACAATGACCCGCTGCAGCGGTCTCGTCTGGGGGCGGCCCTGAACCGCCTCGGCGAAGAGCAGCGCGCGGTGCTGATGCTCATTGTCGTCGAAGGCTACAGCTATCAGGATGTCGCGGACATGCTCGATATCCCGATCGGCACCGTGATGTCGCGCCTGTCGCGCGCCCGCCAGAAGATGACCAGCCTGCTGAGTGCAGACAATGTTGTCACGCTTCGGAGACCAAGATGA
PROTEIN sequence
Length: 160
VLALLPSLRRYSRSLTRSDADGEDLLQDCVEKVLIRRSQWRGLNLRGWVLTIMTNLYRNGRRQQGGRSFVDIDDNSHLPAAEENNDPLQRSRLGAALNRLGEEQRAVLMLIVVEGYSYQDVADMLDIPIGTVMSRLSRARQKMTSLLSADNVVTLRRPR*