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SCNpilot_cont_500_bf_scaffold_16

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Displaying items 1-30 of 325 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_16_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111..428)
DNA (318bp) protein (106aa)
Cupin domain-containing protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2GD24_9SPHN
Cupin domain-containing protein {ECO:0000313|EMBL:EJL27780.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein; K11312 cupin 2 domain-containing protein
SCNpilot_cont_500_bf_scaffold_16_2
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

618..1151
DNA (534bp) protein (178aa)
Hemerythrin hhE cation binding domain-containing protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4Y1_9SPHN
hemerythrin hhE cation binding domain-containing protein
Hemerythrin hhE cation binding domain-containing protein {ECO:0000313|EMBL:AGH51100.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_cont_500_bf_scaffold_16_3
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1155..1610
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H9M0_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP57727.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_500_bf_scaffold_16_4
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1607..2455)
DNA (849bp) protein (283aa)
haloacid dehalogenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A3BB47 rbh
haloacid dehalogenase rbh
Haloacid dehalogenase-like hydrolase {ECO:0000313|EMBL:ABD26298.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_16_5
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2442..3923)
DNA (1482bp) protein (494aa)
Pyruvate:Oxaloacetate transcarboxylase domain protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MPX0_9SPHN rbh
Pyruvate:Oxaloacetate transcarboxylase domain protein {ECO:0000313|EMBL:CCW18991.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
pyruvate carboxyltransferase rbh
SCNpilot_cont_500_bf_scaffold_16_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3927..5255)
DNA (1329bp) protein (443aa)
carbamoyl-phosphate synthase L chain, ATP-binding; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] rbh
Carbamoyl-phosphate synthase L chain, ATP-binding protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G773_NOVAD rbh
Carbamoyl-phosphate synthase L chain, ATP-binding protein {ECO:0000313|EMBL:ABD26300.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_16_7
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5267..5725)
DNA (459bp) protein (153aa)
acetyl-CoA carboxylase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A6F567
Biotin carboxyl carrier protein {ECO:0000313|EMBL:GAO56032.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
biotin carboxyl carrier protein
SCNpilot_cont_500_bf_scaffold_16_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5722..6960)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G771_NOVAD rbh
Transcriptional regulator {ECO:0000313|EMBL:GAO56033.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_16_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7096..7911
DNA (816bp) protein (272aa)
IclR family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32829
Transcriptional regulator of iclR family {ECO:0000313|EMBL:GAO56034.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
IclR family transcriptional regulator; K05818 IclR family transcriptional regulator, mhp operon transcriptional activator
SCNpilot_cont_500_bf_scaffold_16_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8039..9055
DNA (1017bp) protein (339aa)
Alcohol dehydrogenase superfamily, zinc-containing n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G769_NOVAD rbh
alcohol dehydrogenase rbh
Alcohol dehydrogenase superfamily, zinc-containing {ECO:0000313|EMBL:ABD26304.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_16_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9122..9676
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQS6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO56036.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_16_12
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9673..10911
DNA (1239bp) protein (413aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G767_NOVAD rbh
major facilitator transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD26306.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_16_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10931..11869
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43E2C
Transcriptional regulator of araC family {ECO:0000313|EMBL:GAO56038.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
AraC family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_16_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12002..14557
DNA (2556bp) protein (852aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B65AD7 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO56039.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
SCNpilot_cont_500_bf_scaffold_16_15
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14625..15158
DNA (534bp) protein (178aa)
2,4''''-dihydroxyacetophenone dioxygenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4C7D0 rbh
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:GAO56040.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
2,4'-dihydroxyacetophenone dioxygenase rbh
SCNpilot_cont_500_bf_scaffold_16_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15181..15714
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G762_NOVAD
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:GAO56042.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_16_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15728..16567
DNA (840bp) protein (280aa)
short-chain dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C94C rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABD26313.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_16_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16564..16884
DNA (321bp) protein (107aa)
cytochrome CBB3 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B77C63
4-cresol dehydrogenase [hydroxylating] cytochrome c subunit {ECO:0000313|EMBL:GAO53890.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
cytochrome c, class I
SCNpilot_cont_500_bf_scaffold_16_19
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16881..18500
DNA (1620bp) protein (540aa)
Twin-arginine translocation pathway signal n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G426_NOVAD rbh
Twin-arginine translocation pathway signal protein {ECO:0000313|EMBL:KHS45000.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
twin-arginine translocation pathway signal protein rbh
SCNpilot_cont_500_bf_scaffold_16_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18500..19255
DNA (756bp) protein (252aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G425_NOVAD rbh
short-chain dehydrogenase/reductase SDR rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABD27398.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_16_21
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19294..19830
DNA (537bp) protein (179aa)
tRNA modification GTPase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5C6DA rbh
2,4'-dihydroxyacetophenone dioxygenase rbh
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:ABD26310.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_16_22
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19843..20850
DNA (1008bp) protein (336aa)
molecular chaperone GroES n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B373EC rbh
Threonine dehydrogenase and related Zn-dependent dehydrogenases {ECO:0000313|EMBL:GAO56047.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Zn-dependent alcohol dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_16_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20858..22423
DNA (1566bp) protein (522aa)
Acyl-CoA synthetase {ECO:0000313|EMBL:BAK66831.1}; EC=6.2.1.- {ECO:0000313|EMBL:BAK66831.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Acyl-CoA synthetase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHQ8_9SPHN rbh
acyl-CoA synthetase rbh
SCNpilot_cont_500_bf_scaffold_16_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22449..23783)
DNA (1335bp) protein (445aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003685417 rbh
Sphingomonas taxi strain 30a NODE_29, whole genome shotgun sequence {ECO:0000313|EMBL:KIU27213.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
mcpAch2; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_cont_500_bf_scaffold_16_25
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23936..24877)
DNA (942bp) protein (314aa)
UPI0003D019D2 related cluster n=1 Tax=unknown RepID=UPI0003D019D2 rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:ESZ89075.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
putative bifunctional protein: class I glutamine amidotransferase-like, transcriptional regulator protein AraC/XylS family rbh
SCNpilot_cont_500_bf_scaffold_16_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24999..25805
DNA (807bp) protein (269aa)
AraC family transcriptional regulator n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B70519 rbh
Short-chain dehydrogenases of various substrate specificities {ECO:0000313|EMBL:GAO56520.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
putative oxidoreductase protein rbh
SCNpilot_cont_500_bf_scaffold_16_27
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25844..26608
DNA (765bp) protein (255aa)
short-chain dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32FAC rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:ESZ89077.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_cont_500_bf_scaffold_16_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26654..27181
DNA (528bp) protein (176aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Carboxymuconolactone decarboxylase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAJ3_9SPHN
ahpD; alkylhydroperoxidase AhpD core
SCNpilot_cont_500_bf_scaffold_16_29
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27276..27692)
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Methylobacterium extorquens RepID=C5B518_METEA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS43550.1}; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
SCNpilot_cont_500_bf_scaffold_16_30
Streptomyces sp. Mg1, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27719..28342
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI00037A724C
Putative uncharacterized protein {ECO:0000313|EMBL:EDX26804.1}; TaxID=465541 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. Mg1.;"
Displaying items 1-30 of 325 in total

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