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SCNpilot_cont_500_bf_scaffold_121

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Displaying items 1-30 of 181 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_121_1
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2124..2885)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C8EA
Uncharacterized protein {ECO:0000313|EMBL:EQB04986.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
replication protein A
SCNpilot_cont_500_bf_scaffold_121_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3173..5479)
DNA (2307bp) protein (769aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000376C02A
TonB-dependent receptor {ECO:0000313|EMBL:GAO55581.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
SCNpilot_cont_500_bf_scaffold_121_3
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5753..7243)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MM91_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CCW16603.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_121_4
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7316..9322)
DNA (2007bp) protein (669aa)
dethiobiotin synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B516E6 rbh
diguanylate cyclase/phosphodiesterase rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ACK83408.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_cont_500_bf_scaffold_121_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9519..11993)
DNA (2475bp) protein (825aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B551ED
TonB-dependent receptor {ECO:0000313|EMBL:GAO53433.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent outer membrane receptor FecA5; K02014 iron complex outermembrane recepter protein
SCNpilot_cont_500_bf_scaffold_121_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12222..13601)
DNA (1380bp) protein (460aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDX8_9SPHN rbh
Sensor histidine kinase {ECO:0000313|EMBL:GAO53431.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sensory transduction histidine kinase
SCNpilot_cont_500_bf_scaffold_121_7
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13589..14275)
DNA (687bp) protein (229aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003609B5F
Sphingomonas taxi strain 30a NODE_19, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29681.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
two component transcriptional regulator
SCNpilot_cont_500_bf_scaffold_121_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14442..15443
DNA (1002bp) protein (334aa)
LacI family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IN45_9SPHN
LacI family transcriptional regulator
LacI family transcriptional regulator {ECO:0000313|EMBL:BAK65493.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_500_bf_scaffold_121_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15701..16324)
DNA (624bp) protein (208aa)
TadE-like protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E7P8_9SPHN
TadE-like protein {ECO:0000313|EMBL:EHJ62541.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
TadE-like protein
SCNpilot_cont_500_bf_scaffold_121_10
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16321..16908)
DNA (588bp) protein (196aa)
TadE-like n=2 Tax=Novosphingobium RepID=F6INE4_9SPHN
Pilus assembly protein TadE {ECO:0000313|EMBL:KHK92036.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
TadE-like protein
SCNpilot_cont_500_bf_scaffold_121_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16908..18824)
DNA (1917bp) protein (639aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G5D8_NOVAD rbh
Flp pilus assembly protein TadG {ECO:0000313|EMBL:KHS45621.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_121_12
unknown

Not on your lists

19104..19475
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_121_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19611..20813)
DNA (1203bp) protein (401aa)
membrane protein n=2 Tax=Caulobacter RepID=UPI0003688C50 rbh
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:EJL30669.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
hypothetical protein; K07001 NTE family protein rbh
SCNpilot_cont_500_bf_scaffold_121_14
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20870..22354)
DNA (1485bp) protein (495aa)
Major facilitator transporter n=1 Tax=Novosphingobium sp. PP1Y RepID=F6INE6_9SPHN rbh
major facilitator superfamily transporter rbh
Major facilitator transporter {ECO:0000313|EMBL:CCA92948.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_500_bf_scaffold_121_15
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22551..23585)
DNA (1035bp) protein (345aa)
LacI family transcriptional regulator n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IM88_9SPHN rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:EQB12885.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
LacI family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_121_16
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23825..26617
DNA (2793bp) protein (931aa)
outer membrane insertion C-terminal signal n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5D6A4 rbh
TonB-dependent receptor {ECO:0000313|EMBL:EJK82751.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
outer membrane insertion C-terminal signal rbh
SCNpilot_cont_500_bf_scaffold_121_17
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26690..28210
DNA (1521bp) protein (507aa)
tryptophan halogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B2E953 rbh
Tryptophan halogenase {ECO:0000313|EMBL:EZP56977.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
tryptophan halogenase rbh
SCNpilot_cont_500_bf_scaffold_121_18
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28225..30006
DNA (1782bp) protein (594aa)
UPI0003D5F14D related cluster n=1 Tax=unknown RepID=UPI0003D5F14D rbh
Alpha-amylase {ECO:0000313|EMBL:ETI63183.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
alpha amylase rbh
SCNpilot_cont_500_bf_scaffold_121_19
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30019..31623
DNA (1605bp) protein (535aa)
alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20]
Alpha-amylase family protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAZ8_9SPHN rbh
Alpha-amylase family protein {ECO:0000313|EMBL:EGD58224.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_500_bf_scaffold_121_20
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31653..33701
DNA (2049bp) protein (683aa)
alpha-glucosidase (EC:3.2.1.20); K01187 alpha-glucosidase [EC:3.2.1.20] rbh
Alpha-glucosidase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZAZ9_9SPHN rbh
Alpha-glucosidase {ECO:0000313|EMBL:EGD58223.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_500_bf_scaffold_121_21
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33748..34824
DNA (1077bp) protein (359aa)
pyridoxal-5'-phosphate-dependent protein subunit beta; K01738 cysteine synthase A [EC:2.5.1.47]
cysteine synthase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B74A5A rbh
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
SCNpilot_cont_500_bf_scaffold_121_22
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34859..36865
DNA (2007bp) protein (669aa)
Oligopeptidase A {ECO:0000313|EMBL:CCW16390.1}; EC=3.4.24.70 {ECO:0000313|EMBL:CCW16390.1};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
oligopeptidase A (EC:3.4.24.70); K01414 oligopeptidase A [EC:3.4.24.70] rbh
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0002D860EA rbh
SCNpilot_cont_500_bf_scaffold_121_23
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36931..37944
DNA (1014bp) protein (338aa)
FMN-dependent alpha-hydroxy acid dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15]
FMN-dependent alpha-hydroxy acid dehydrogenase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BB43_PARDP
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
SCNpilot_cont_500_bf_scaffold_121_24
Thauera sp. 63, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37946..38629
DNA (684bp) protein (228aa)
PKHD-type hydroxylase C664_18854 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=497321 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 63.;"
putative hydroxylase; K07336 PKHD-type hydroxylase [EC:1.14.11.-]
PKHD-type hydroxylase C664_18854 n=1 Tax=Thauera sp. 63 RepID=N6WZP4_9RHOO
SCNpilot_cont_500_bf_scaffold_121_25
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38649..39290
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZB26_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EGD58107.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_121_26
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

39390..40559
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00037973E1 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHS42958.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_121_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40670..42610
DNA (1941bp) protein (647aa)
potassium transporter Kup n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B30529 rbh
K+ potassium transporter; K03549 KUP system potassium uptake protein rbh
Probable potassium transport system protein kup 2 {ECO:0000255|HAMAP-Rule:MF_01522}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_121_28
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42629..44026
DNA (1398bp) protein (466aa)
periplasmic sensor signal transduction histidine kinase; K07646 two-component system, OmpR family, sensor histidine kinase KdpD [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G871_NOVAD rbh
SCNpilot_cont_500_bf_scaffold_121_29
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44023..44697
DNA (675bp) protein (225aa)
Fis family transcriptional regulator n=1 Tax=Sphingobium sp. YL23 RepID=UPI00039A8A76
two component transcriptional regulator; K07667 two-component system, OmpR family, KDP operon response regulator KdpE
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABD25951.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_cont_500_bf_scaffold_121_30
Pseudomonas sp. GM24, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44750..46777
DNA (2028bp) protein (676aa)
Putative acyltransferase n=2 Tax=Pseudomonas RepID=J2YW79_9PSED rbh
Putative acyltransferase {ECO:0000313|EMBL:EJM45073.1}; TaxID=1144326 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM24.;"
o-antigen acetylase
Displaying items 1-30 of 181 in total

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