ggKbase home page

SCNpilot_cont_500_bf_scaffold_174

Search features with annotation key words

Displaying items 1-30 of 177 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_174_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(65..1144)
DNA (1080bp) protein (360aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4J0_9SPHN rbh
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD60460.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraU family protein; K12060 conjugal transfer pilus assembly protein TraU
SCNpilot_cont_500_bf_scaffold_174_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1141..1800)
DNA (660bp) protein (220aa)
Type-F conjugative transfer system protein TraW n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4I9_9SPHN rbh
Type-F conjugative transfer system protein TraW {ECO:0000313|EMBL:EGD60459.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Type-F conjugative transfer system protein TraW; K12061 conjugal transfer pilus assembly protein TraW
SCNpilot_cont_500_bf_scaffold_174_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1800..2342)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000367C420 rbh
Conjugal transfer protein {ECO:0000313|EMBL:EGD59309.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
type IV secretory pathway protease TraF-like protein; K12062 conjugal transfer pilin signal peptidase TrbI
SCNpilot_cont_500_bf_scaffold_174_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2326..2880)
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7R7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59308.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_174_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2873..3208)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002FB4C27
Uncharacterized protein {ECO:0000313|EMBL:EGD59307.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_500_bf_scaffold_174_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3205..5751)
DNA (2547bp) protein (849aa)
Type-IV secretion system protein TraC n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7R9_9SPHN
Type-IV secretion system protein TraC {ECO:0000313|EMBL:EGD59306.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
Type-IV secretion system protein TraC
SCNpilot_cont_500_bf_scaffold_174_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5758..6447)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59305.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein; K12064 conjugal transfer pilus assembly protein TraV
SCNpilot_cont_500_bf_scaffold_174_8
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6451..7344)
DNA (894bp) protein (298aa)
hypothetical protein; K03981 thiol:disulfide interchange protein DsbC [EC:5.3.4.1]
Protein disulfide-isomerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S1_9SPHN rbh
Protein disulfide-isomerase {ECO:0000313|EMBL:EGD59304.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_500_bf_scaffold_174_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7361..8725)
DNA (1365bp) protein (455aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S2_9SPHN
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD59303.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraB pilus assembly family protein
SCNpilot_cont_500_bf_scaffold_174_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8722..9564)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7S3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59302.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein; K12066 conjugal transfer pilus assembly protein TraK
SCNpilot_cont_500_bf_scaffold_174_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9561..10124)
DNA (564bp) protein (188aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S4_9SPHN
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD59301.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraE family protein; K12067 conjugal transfer pilus assembly protein TraE
SCNpilot_cont_500_bf_scaffold_174_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10126..10332)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59300.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_174_13
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10436..10759)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59298.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_174_14
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11533..12039
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59297.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_cont_500_bf_scaffold_174_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12125..12910)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000363BB56
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:EGD60597.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
lytic transglycosylase, catalytic
SCNpilot_cont_500_bf_scaffold_174_16
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13697..14740)
DNA (1044bp) protein (348aa)
vanillate O-demethylase oxygenase (EC:1.14.13.82); K03862 vanillate monooxygenase [EC:1.14.13.82] rbh
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000382B9E0 rbh
Aromatic-ring-hydroxylating dioxygenase {ECO:0000313|EMBL:EXS72053.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
SCNpilot_cont_500_bf_scaffold_174_17
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14913..15692)
DNA (780bp) protein (260aa)
UPI0003D68B43 related cluster n=1 Tax=unknown RepID=UPI0003D68B43 rbh
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:ETI63678.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
short-chain dehydrogenase rbh
SCNpilot_cont_500_bf_scaffold_174_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16274..17587
DNA (1314bp) protein (438aa)
UPI0003D5CB0B related cluster n=1 Tax=unknown RepID=UPI0003D5CB0B rbh
Putative dioxygenase {ECO:0000313|EMBL:KEZ16683.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
Rieske (2Fe-2S) domain-containing protein rbh
SCNpilot_cont_500_bf_scaffold_174_19
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17731..18663
DNA (933bp) protein (311aa)
ferredoxin:oxidoreductase FAD/NAD(P)-binding subunit; K03863 vanillate monooxygenase [EC:1.14.13.82]
UPI0003D5C777 related cluster n=1 Tax=unknown RepID=UPI0003D5C777 rbh
Phthalate 4,5-dioxygenase {ECO:0000313|EMBL:ETI63676.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_cont_500_bf_scaffold_174_20
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18742..20070
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IMA8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB10764.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
4-hydroxybenzoate transporter
SCNpilot_cont_500_bf_scaffold_174_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20073..21701
DNA (1629bp) protein (543aa)
glucose-methanol-choline oxidoreductase; K00119 [EC:1.1.99.-]
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IGG0_9SPHN rbh
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:KEZ16680.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_500_bf_scaffold_174_22
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21732..23219
DNA (1488bp) protein (496aa)
aldehyde dehydrogenase (EC:1.2.99.3); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036ED640 rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:KEZ20999.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCNpilot_cont_500_bf_scaffold_174_23
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23228..24454)
DNA (1227bp) protein (409aa)
UPI0003D68541 related cluster n=1 Tax=unknown RepID=UPI0003D68541 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ETI63671.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
LysR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_174_24
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24584..25723
DNA (1140bp) protein (380aa)
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal; K06446 acyl-CoA dehydrogenase [EC:1.3.99.-] rbh
UPI0003D5F609 related cluster n=1 Tax=unknown RepID=UPI0003D5F609 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETI63670.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_cont_500_bf_scaffold_174_25
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25761..26951)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IMB8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB10769.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_174_26
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27063..27800)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036A773B rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE56151.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Pyruvate dehydrogenase, putative
SCNpilot_cont_500_bf_scaffold_174_27
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27932..28678
DNA (747bp) protein (249aa)
Electron transfer flavoprotein, beta subunit n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRI0_9SPHN rbh
Electron transfer flavoprotein, beta subunit {ECO:0000313|EMBL:CCW19820.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum BiD32.;"
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit rbh
SCNpilot_cont_500_bf_scaffold_174_28
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28680..29609
DNA (930bp) protein (310aa)
Electron transfer flavoprotein alpha-subunit,(ETFLS) n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBL9_9SPHN
Electron transfer flavoprotein alpha-subunit,(ETFLS) {ECO:0000313|EMBL:EHJ61301.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
SCNpilot_cont_500_bf_scaffold_174_29
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29626..31263
DNA (1638bp) protein (546aa)
etf; electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1); K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NAH6_9SPHN rbh
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:EAT08030.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
SCNpilot_cont_500_bf_scaffold_174_30
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31312..32412)
DNA (1101bp) protein (367aa)
UPI0003D5CF98 related cluster n=1 Tax=unknown RepID=UPI0003D5CF98 rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:EXS71469.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
alcohol dehydrogenase rbh
Displaying items 1-30 of 177 in total

View Taxonomy