name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_500_bf_scaffold_153_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..529)
|
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V324_VARPE
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU39163.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_153_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
642..911
|
ferredoxin n=1 Tax=Variovorax paradoxus RepID=UPI00035F388D
NADH:ubiquinone oxidoreductase chain I-like protein {ECO:0000313|EMBL:EJL73774.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
4fe-4S ferredoxin, iron-sulfur binding protein
|
|
SCNpilot_cont_500_bf_scaffold_153_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(897..1346)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000367142E
Uncharacterized protein {ECO:0000313|EMBL:EJL73773.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_cont_500_bf_scaffold_153_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1443..2075)
|
peptidyL-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
rbh
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Peptidyl-tRNA hydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V281_VARPE
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2154..2834)
|
50S ribosomal protein L25 n=1 Tax=Variovorax sp. CF313 RepID=J3CL60_9BURK
rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rplY; 50S ribosomal protein L25
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2921..3895)
|
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vario
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1]
rbh
ribose-phosphate pyrophosphokinase n=1 Tax=Variovorax paradoxus RepID=UPI0003723520
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_trna_5
unknown
|
Not on your lists |
comp(4038..4111)
|
transferRNA
|
|
SCNpilot_cont_500_bf_scaffold_153_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4182..5078)
|
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
4-diphosphocytidyL-2c-methyL-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]
rbh
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CL38_9BURK
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5075..5611)
|
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E9FD1
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
outer membrane lipoprotein lolb; K02494 outer membrane lipoprotein LolB
|
|
SCNpilot_cont_500_bf_scaffold_153_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5614..7467)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C9EC5
rbh
hypothetical protein
rbh
Tetratricopeptide domain protein {ECO:0000313|EMBL:ADU39155.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_153_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7549..8361
|
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
formamidopyrimidine-DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI000380CD25
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8451..10412
|
dynamin family protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B06EF
rbh
Dynamin family protein {ECO:0000313|EMBL:EJL73765.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10441..11487
|
A/G-specific adenine glycosylase n=1 Tax=Variovorax sp. CF313 RepID=J3CL35_9BURK
rbh
Variovorax paradoxus strain MEDvA23 contig_136, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16102.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_cont_500_bf_scaffold_153_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11494..12372)
|
glmZ(sRNA)-inactivating NTPase n=1 Tax=Variovorax paradoxus RepID=UPI00037A123A
rbh
Nucleotide-binding protein PMI12_03252 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_500_bf_scaffold_153_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12369..14051)
|
DNA repair protein RecN n=1 Tax=Variovorax sp. CF313 RepID=J2T6T3_9BURK
rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
DNA repair protein recn; K03631 DNA repair protein RecN (Recombination protein N)
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14053..14964)
|
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CL55_9BURK
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14996..16003
|
Heat-inducible transcription repressor hrcA n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V269_VARPE
rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
heat-inducible transcription repressor hrca; K03705 heat-inducible transcriptional repressor
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_trna_1
unknown
|
Not on your lists |
16036..16109
|
transferRNA
|
|
SCNpilot_cont_500_bf_scaffold_153_17
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16145..18004)
|
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KK71_9BURK
rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJE51583.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
sensor diguanylate cyclase
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_18
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18377..19066
|
Uncharacterized protein n=1 Tax=Serratia sp. M24T3 RepID=I0QY34_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EIC86207.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
hypothetical protein
|
|
SCNpilot_cont_500_bf_scaffold_153_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19191..20390
|
aldose sugar dehydrogenase YliI n=1 Tax=Variovorax paradoxus RepID=UPI00038222C8
rbh
putative soluble aldose sugar dehydrogenase
rbh
Putative soluble aldose sugar dehydrogenase {ECO:0000313|EMBL:AGU53343.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_153_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20408..21223)
|
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.3.39); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-]
rbh
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH {ECO:0000313|EMBL:AGU49187.1}; EC=4.1.2.52 {ECO:0000313|EMBL:AGU49187.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH n=1 Tax=Variovorax paradoxus B4 RepID=T1X8D5_VARPD
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21234..22703)
|
succinic semialdehyde dehydrogenase (EC:1.2.1.24); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
rbh
Succinic semialdehyde dehydrogenase {ECO:0000313|EMBL:ACS18598.1}; EC=1.2.1.24 {ECO:0000313|EMBL:ACS18598.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Succinic semialdehyde dehydrogenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVE9_VARPS
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22746..24269)
|
Altronate dehydratase {ECO:0000313|EMBL:AGU49189.1}; EC=4.2.1.42 {ECO:0000313|EMBL:AGU49189.1};; EC=4.2.1.7 {ECO:0000313|EMBL:AGU49189.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
galactarate dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00035E7FD7
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24294..25292)
|
Putative Bug-like extra cytoplasmic solute receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XAK5_VARPD
rbh
putative Bug-like extra cytoplasmic solute receptor, TTT family
rbh
Putative Bug-like extra cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU49190.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_153_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25423..26358
|
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9P3_VARPD
rbh
transcriptional regulator, LysR family
rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU49191.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_153_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26374..27339)
|
LacI family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003787444
rbh
Variovorax paradoxus strain MEDvA23 contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19080.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative Bug-like extracytoplasmic solute binding receptor,TTT family
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27363..28238)
|
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2K5W6_9BURK
rbh
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:EJL75585.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
amidohydrolase 2; K07046
rbh
|
|
SCNpilot_cont_500_bf_scaffold_153_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28242..29447)
|
Putative acyl-CoA transferase n=1 Tax=Variovorax paradoxus B4 RepID=T1XFL1_VARPD
rbh
putative acyl-CoA transferase
rbh
Putative acyl-CoA transferase {ECO:0000313|EMBL:AGU51094.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_153_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29462..30457)
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TBS9_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL75587.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|