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SCNpilot_cont_500_bf_scaffold_153

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Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_153_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..529)
DNA (528bp) protein (176aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V324_VARPE
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU39163.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_153_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

642..911
DNA (270bp) protein (90aa)
ferredoxin n=1 Tax=Variovorax paradoxus RepID=UPI00035F388D
NADH:ubiquinone oxidoreductase chain I-like protein {ECO:0000313|EMBL:EJL73774.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
4fe-4S ferredoxin, iron-sulfur binding protein
SCNpilot_cont_500_bf_scaffold_153_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(897..1346)
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000367142E
Uncharacterized protein {ECO:0000313|EMBL:EJL73773.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_153_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1443..2075)
DNA (633bp) protein (211aa)
peptidyL-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] rbh
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Peptidyl-tRNA hydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V281_VARPE rbh
SCNpilot_cont_500_bf_scaffold_153_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2154..2834)
DNA (681bp) protein (227aa)
50S ribosomal protein L25 n=1 Tax=Variovorax sp. CF313 RepID=J3CL60_9BURK rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rplY; 50S ribosomal protein L25 rbh
SCNpilot_cont_500_bf_scaffold_153_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2921..3895)
DNA (975bp) protein (325aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Vario
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] rbh
ribose-phosphate pyrophosphokinase n=1 Tax=Variovorax paradoxus RepID=UPI0003723520 rbh
SCNpilot_cont_500_bf_scaffold_153_trna_5
unknown

Not on your lists

comp(4038..4111)
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_153_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4182..5078)
DNA (897bp) protein (299aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
4-diphosphocytidyL-2c-methyL-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] rbh
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CL38_9BURK rbh
SCNpilot_cont_500_bf_scaffold_153_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5075..5611)
DNA (537bp) protein (179aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00037E9FD1
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
outer membrane lipoprotein lolb; K02494 outer membrane lipoprotein LolB
SCNpilot_cont_500_bf_scaffold_153_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5614..7467)
DNA (1854bp) protein (618aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C9EC5 rbh
hypothetical protein rbh
Tetratricopeptide domain protein {ECO:0000313|EMBL:ADU39155.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_153_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7549..8361
DNA (813bp) protein (271aa)
mutM; formamidopyrimidine-DNA glycosylase MutM (EC:3.2.2.23 4.2.99.18) rbh
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
formamidopyrimidine-DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI000380CD25 rbh
SCNpilot_cont_500_bf_scaffold_153_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8451..10412
DNA (1962bp) protein (654aa)
dynamin family protein n=1 Tax=Variovorax paradoxus RepID=UPI00037B06EF rbh
Dynamin family protein {ECO:0000313|EMBL:EJL73765.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_153_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10441..11487
DNA (1047bp) protein (349aa)
a/g-specific adenine glycosylase; K03575 A/G-specific adenine glycosylase [EC:3.2.2.-] rbh
A/G-specific adenine glycosylase n=1 Tax=Variovorax sp. CF313 RepID=J3CL35_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_136, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ16102.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_500_bf_scaffold_153_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11494..12372)
DNA (879bp) protein (293aa)
glmZ(sRNA)-inactivating NTPase n=1 Tax=Variovorax paradoxus RepID=UPI00037A123A rbh
Nucleotide-binding protein PMI12_03252 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K06958 UPF0042 nucleotide-binding protein rbh
SCNpilot_cont_500_bf_scaffold_153_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12369..14051)
DNA (1683bp) protein (561aa)
DNA repair protein RecN n=1 Tax=Variovorax sp. CF313 RepID=J2T6T3_9BURK rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
DNA repair protein recn; K03631 DNA repair protein RecN (Recombination protein N) rbh
SCNpilot_cont_500_bf_scaffold_153_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14053..14964)
DNA (912bp) protein (304aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ATP-nad/acox kinase; K00858 NAD+ kinase [EC:2.7.1.23] rbh
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Variovorax sp. CF313 RepID=J3CL55_9BURK rbh
SCNpilot_cont_500_bf_scaffold_153_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14996..16003
DNA (1008bp) protein (336aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V269_VARPE rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
heat-inducible transcription repressor hrca; K03705 heat-inducible transcriptional repressor rbh
SCNpilot_cont_500_bf_scaffold_153_trna_1
unknown

Not on your lists

16036..16109
DNA (74bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_153_17
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16145..18004)
DNA (1860bp) protein (620aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J0KK71_9BURK rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJE51583.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
sensor diguanylate cyclase rbh
SCNpilot_cont_500_bf_scaffold_153_18
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18377..19066
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Serratia sp. M24T3 RepID=I0QY34_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EIC86207.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_153_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19191..20390
DNA (1200bp) protein (400aa)
aldose sugar dehydrogenase YliI n=1 Tax=Variovorax paradoxus RepID=UPI00038222C8 rbh
putative soluble aldose sugar dehydrogenase rbh
Putative soluble aldose sugar dehydrogenase {ECO:0000313|EMBL:AGU53343.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_153_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20408..21223)
DNA (816bp) protein (272aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.3.39); K02510 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [EC:4.1.2.-] rbh
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH {ECO:0000313|EMBL:AGU49187.1}; EC=4.1.2.52 {ECO:0000313|EMBL:AGU49187.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
4-hydroxy-2-oxo-heptane-1,7-dioate aldolase HpcH n=1 Tax=Variovorax paradoxus B4 RepID=T1X8D5_VARPD rbh
SCNpilot_cont_500_bf_scaffold_153_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21234..22703)
DNA (1470bp) protein (490aa)
succinic semialdehyde dehydrogenase (EC:1.2.1.24); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Succinic semialdehyde dehydrogenase {ECO:0000313|EMBL:ACS18598.1}; EC=1.2.1.24 {ECO:0000313|EMBL:ACS18598.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Succinic semialdehyde dehydrogenase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CVE9_VARPS rbh
SCNpilot_cont_500_bf_scaffold_153_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22746..24269)
DNA (1524bp) protein (508aa)
altronate dehydratase (EC:4.2.1.7 4.2.1.42) rbh
Altronate dehydratase {ECO:0000313|EMBL:AGU49189.1}; EC=4.2.1.42 {ECO:0000313|EMBL:AGU49189.1};; EC=4.2.1.7 {ECO:0000313|EMBL:AGU49189.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
galactarate dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00035E7FD7 rbh
SCNpilot_cont_500_bf_scaffold_153_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24294..25292)
DNA (999bp) protein (333aa)
Putative Bug-like extra cytoplasmic solute receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XAK5_VARPD rbh
putative Bug-like extra cytoplasmic solute receptor, TTT family rbh
Putative Bug-like extra cytoplasmic solute receptor, TTT family {ECO:0000313|EMBL:AGU49190.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_153_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25423..26358
DNA (936bp) protein (312aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1X9P3_VARPD rbh
transcriptional regulator, LysR family rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU49191.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_153_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26374..27339)
DNA (966bp) protein (322aa)
LacI family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003787444 rbh
Variovorax paradoxus strain MEDvA23 contig_110, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ19080.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative Bug-like extracytoplasmic solute binding receptor,TTT family rbh
SCNpilot_cont_500_bf_scaffold_153_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27363..28238)
DNA (876bp) protein (292aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2K5W6_9BURK rbh
Putative TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:EJL75585.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
amidohydrolase 2; K07046 rbh
SCNpilot_cont_500_bf_scaffold_153_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28242..29447)
DNA (1206bp) protein (402aa)
Putative acyl-CoA transferase n=1 Tax=Variovorax paradoxus B4 RepID=T1XFL1_VARPD rbh
putative acyl-CoA transferase rbh
Putative acyl-CoA transferase {ECO:0000313|EMBL:AGU51094.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_153_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29462..30457)
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2TBS9_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL75587.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
Displaying items 1-30 of 131 in total

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