name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_500_bf_scaffold_159_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2..97)
|
Elongation factor Tu n=4 Tax=Variovorax RepID=C5CKE6_VARPS
elongation factor Tu; K02358 elongation factor Tu
Translation elongation factor-like GTPase {ECO:0000313|EMBL:EJL78956.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_500_bf_scaffold_159_trna_3
unknown
|
Not on your lists |
comp(174..245)
|
transferRNA
|
|
SCNpilot_cont_500_bf_scaffold_159_trna_2
unknown
|
Not on your lists |
comp(300..370)
|
transferRNA
|
|
SCNpilot_cont_500_bf_scaffold_159_trna_1
unknown
|
Not on your lists |
comp(440..522)
|
transferRNA
|
|
SCNpilot_cont_500_bf_scaffold_159_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(632..1339)
|
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
uracil-DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI00037D96A6
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1336..2136)
|
indole-3-glyceroL-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48]
rbh
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Indole-3-glycerol phosphate synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6J2_VARPE
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2168..3190)
|
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18]
rbh
anthranilate phosphoribosyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036F4060
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3212..3871)
|
Putative threonine efflux protein n=1 Tax=Variovorax sp. CF313 RepID=J2KBD1_9BURK
rbh
Putative threonine efflux protein {ECO:0000313|EMBL:EJL77520.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
lysine exporter protein LysE/YggA
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3889..4947)
|
low specificity L-threonine aldolase (EC:4.1.2.48)
rbh
Low specificity L-threonine aldolase {ECO:0000313|EMBL:AGU47855.1}; EC=4.1.2.48 {ECO:0000313|EMBL:AGU47855.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Low specificity L-threonine aldolase n=1 Tax=Variovorax paradoxus B4 RepID=T1X6Q9_VARPD
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4953..5537)
|
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31205.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KIQ31205.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glutamine amidotransferase of anthranilate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27]
rbh
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I8_VARPE
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5534..5926)
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I7_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34850.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_159_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5929..7431)
|
trpE; anthranilate synthase component 1 TrpE (EC:4.1.3.27)
rbh
Anthranilate synthase component 1 TrpE {ECO:0000313|EMBL:AGU47852.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AGU47852.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Anthranilate synthase component 1 TrpE n=1 Tax=Variovorax paradoxus B4 RepID=T1X4L2_VARPD
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7780..8382
|
Putative lipoprotein transmembrane n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I5_VARPE
rbh
lipoprotein transmembrane
rbh
Putative lipoprotein transmembrane {ECO:0000313|EMBL:ADU34848.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_159_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(8397..9098)
|
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
2-phosphoglycolate phosphatase n=1 Tax=Variovorax sp. CF313 RepID=J3CSB7_9BURK
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_12
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9408..9833)
|
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q392H7_BURS3
Uncharacterized protein {ECO:0000313|EMBL:KEA58528.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
hypothetical protein
|
|
SCNpilot_cont_500_bf_scaffold_159_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9965..10849
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036101C6
rbh
Variovorax paradoxus strain MEDvA23 contig_97, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20579.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K08994 putative membrane protein
|
|
SCNpilot_cont_500_bf_scaffold_159_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10984..11538
|
DNA-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000370D906
Rrf2 family protein, putative transcriptional regulator {ECO:0000313|EMBL:EJL77507.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
iscR; transcriptional regulator IscR; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
|
|
SCNpilot_cont_500_bf_scaffold_159_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11566..12957)
|
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000363A327
rbh
transcriptional regulator, GntR family
rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU47770.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_159_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13312..13794
|
MSMEG_0572 family protein n=1 Tax=Variovorax sp. CF313 RepID=J2K5M7_9BURK
rbh
MSMEG_0572 family protein {ECO:0000313|EMBL:EJL75500.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13809..14852
|
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K01502 aliphatic nitrilase [EC:3.5.5.7]
rbh
aliphatic nitrilase n=1 Tax=Variovorax paradoxus RepID=UPI00036D6126
rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31213.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_cont_500_bf_scaffold_159_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14815..15897
|
Radical SAM domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKC5_VARPS
rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31239.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
radical SAM protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15900..16460
|
GCN5-related N-acetyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F3_VARPE
rbh
GCN5-like N-acetyltransferaser
rbh
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADU34816.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_159_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16457..17464
|
AIR synthase related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F2_VARPE
rbh
air synthase-like protein; K07123
rbh
AIR synthase related protein {ECO:0000313|EMBL:ADU34815.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_159_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17455..17739
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F1_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34814.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_159_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17777..19084
|
Monooxygenase FAD-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F0_VARPE
rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31218.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
FAD-binding monooxygenase protein; K07222 putative flavoprotein involved in K+ transport
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19096..19773)
|
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J3CSU2_9BURK
rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL77506.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component LuxR family transcriptional regulator
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20014..21357
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KB83_9BURK
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL77505.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type IV / vi secretion system, dotu
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21354..22466
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003708082
rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31221.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_159_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22485..22997)
|
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI00036690F3
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:EJL77504.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion lipoprotein; K11906 type VI secretion system protein VasD
|
|
SCNpilot_cont_500_bf_scaffold_159_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23069..24109
|
type VI secretion protein ImpA n=1 Tax=Variovorax paradoxus RepID=UPI000372184E
rbh
type VI secretion-associated protein, ImpA family
rbh
Type VI secretion-associated protein, ImpA family {ECO:0000313|EMBL:AGU47757.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|