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SCNpilot_cont_500_bf_scaffold_159

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Displaying items 1-30 of 192 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_159_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..97)
DNA (96bp) protein (32aa)
Elongation factor Tu n=4 Tax=Variovorax RepID=C5CKE6_VARPS
elongation factor Tu; K02358 elongation factor Tu
Translation elongation factor-like GTPase {ECO:0000313|EMBL:EJL78956.1}; Flags: Fragment;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_500_bf_scaffold_159_trna_3
unknown

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comp(174..245)
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_159_trna_2
unknown

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comp(300..370)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_159_trna_1
unknown

Not on your lists

comp(440..522)
DNA (83bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_159_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(632..1339)
DNA (708bp) protein (236aa)
uraciL-DNA glycosylase; K03648 uracil-DNA glycosylase [EC:3.2.2.27] rbh
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
uracil-DNA glycosylase n=1 Tax=Variovorax paradoxus RepID=UPI00037D96A6 rbh
SCNpilot_cont_500_bf_scaffold_159_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1336..2136)
DNA (801bp) protein (267aa)
indole-3-glyceroL-phosphate synthase (EC:4.1.1.48); K01609 indole-3-glycerol phosphate synthase [EC:4.1.1.48] rbh
Indole-3-glycerol phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046689}; Short=IGPS {ECO:0000256|HAMAP-Rule:MF_00134};; EC=4.1.1.48 {ECO:0000256|HAMAP-Rule:MF_00134, ECO:0000256|SAAS:SAAS00046705};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Indole-3-glycerol phosphate synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6J2_VARPE rbh
SCNpilot_cont_500_bf_scaffold_159_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2168..3190)
DNA (1023bp) protein (341aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
anthranilate phosphoribosyltransferase (EC:2.4.2.18); K00766 anthranilate phosphoribosyltransferase [EC:2.4.2.18] rbh
anthranilate phosphoribosyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00036F4060 rbh
SCNpilot_cont_500_bf_scaffold_159_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3212..3871)
DNA (660bp) protein (220aa)
Putative threonine efflux protein n=1 Tax=Variovorax sp. CF313 RepID=J2KBD1_9BURK rbh
Putative threonine efflux protein {ECO:0000313|EMBL:EJL77520.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
lysine exporter protein LysE/YggA rbh
SCNpilot_cont_500_bf_scaffold_159_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3889..4947)
DNA (1059bp) protein (353aa)
low specificity L-threonine aldolase (EC:4.1.2.48) rbh
Low specificity L-threonine aldolase {ECO:0000313|EMBL:AGU47855.1}; EC=4.1.2.48 {ECO:0000313|EMBL:AGU47855.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Low specificity L-threonine aldolase n=1 Tax=Variovorax paradoxus B4 RepID=T1X6Q9_VARPD rbh
SCNpilot_cont_500_bf_scaffold_159_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4953..5537)
DNA (585bp) protein (195aa)
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31205.1}; EC=4.1.3.27 {ECO:0000313|EMBL:KIQ31205.1};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glutamine amidotransferase of anthranilate synthase; K01658 anthranilate synthase component II [EC:4.1.3.27] rbh
Glutamine amidotransferase of anthranilate synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I8_VARPE rbh
SCNpilot_cont_500_bf_scaffold_159_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5534..5926)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I7_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34850.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_159_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5929..7431)
DNA (1503bp) protein (501aa)
trpE; anthranilate synthase component 1 TrpE (EC:4.1.3.27) rbh
Anthranilate synthase component 1 TrpE {ECO:0000313|EMBL:AGU47852.1}; EC=4.1.3.27 {ECO:0000313|EMBL:AGU47852.1};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Anthranilate synthase component 1 TrpE n=1 Tax=Variovorax paradoxus B4 RepID=T1X4L2_VARPD rbh
SCNpilot_cont_500_bf_scaffold_159_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7780..8382
DNA (603bp) protein (201aa)
Putative lipoprotein transmembrane n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6I5_VARPE rbh
lipoprotein transmembrane rbh
Putative lipoprotein transmembrane {ECO:0000313|EMBL:ADU34848.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_159_11
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8397..9098)
DNA (702bp) protein (234aa)
Phosphoglycolate phosphatase {ECO:0000256|SAAS:SAAS00077902}; EC=3.1.3.18 {ECO:0000256|SAAS:SAAS00077902};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] rbh
2-phosphoglycolate phosphatase n=1 Tax=Variovorax sp. CF313 RepID=J3CSB7_9BURK rbh
SCNpilot_cont_500_bf_scaffold_159_12
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9408..9833)
DNA (426bp) protein (142aa)
Putative uncharacterized protein n=1 Tax=Burkholderia sp. (strain 383) RepID=Q392H7_BURS3
Uncharacterized protein {ECO:0000313|EMBL:KEA58528.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_159_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9965..10849
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036101C6 rbh
Variovorax paradoxus strain MEDvA23 contig_97, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20579.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_cont_500_bf_scaffold_159_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10984..11538
DNA (555bp) protein (185aa)
DNA-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000370D906
Rrf2 family protein, putative transcriptional regulator {ECO:0000313|EMBL:EJL77507.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
iscR; transcriptional regulator IscR; K13643 Rrf2 family transcriptional regulator, iron-sulfur cluster assembly transcription factor
SCNpilot_cont_500_bf_scaffold_159_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11566..12957)
DNA (1392bp) protein (464aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000363A327 rbh
transcriptional regulator, GntR family rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU47770.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_500_bf_scaffold_159_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13312..13794
DNA (483bp) protein (161aa)
MSMEG_0572 family protein n=1 Tax=Variovorax sp. CF313 RepID=J2K5M7_9BURK rbh
MSMEG_0572 family protein {ECO:0000313|EMBL:EJL75500.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_159_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13809..14852
DNA (1044bp) protein (348aa)
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; K01502 aliphatic nitrilase [EC:3.5.5.7] rbh
aliphatic nitrilase n=1 Tax=Variovorax paradoxus RepID=UPI00036D6126 rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31213.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_500_bf_scaffold_159_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14815..15897
DNA (1083bp) protein (361aa)
Radical SAM domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKC5_VARPS rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31239.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
radical SAM protein rbh
SCNpilot_cont_500_bf_scaffold_159_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15900..16460
DNA (561bp) protein (187aa)
GCN5-related N-acetyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F3_VARPE rbh
GCN5-like N-acetyltransferaser rbh
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADU34816.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_159_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16457..17464
DNA (1008bp) protein (336aa)
AIR synthase related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F2_VARPE rbh
air synthase-like protein; K07123 rbh
AIR synthase related protein {ECO:0000313|EMBL:ADU34815.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_159_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17455..17739
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F1_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU34814.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_159_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17777..19084
DNA (1308bp) protein (436aa)
Monooxygenase FAD-binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6F0_VARPE rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31218.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
FAD-binding monooxygenase protein; K07222 putative flavoprotein involved in K+ transport rbh
SCNpilot_cont_500_bf_scaffold_159_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19096..19773)
DNA (678bp) protein (226aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J3CSU2_9BURK rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL77506.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component LuxR family transcriptional regulator rbh
SCNpilot_cont_500_bf_scaffold_159_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20014..21357
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2KB83_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL77505.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type IV / vi secretion system, dotu rbh
SCNpilot_cont_500_bf_scaffold_159_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21354..22466
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003708082 rbh
Variovorax paradoxus strain MEDvA23 contig_35, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31221.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_159_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22485..22997)
DNA (513bp) protein (171aa)
type VI secretion protein n=1 Tax=Variovorax paradoxus RepID=UPI00036690F3
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:EJL77504.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type VI secretion lipoprotein; K11906 type VI secretion system protein VasD
SCNpilot_cont_500_bf_scaffold_159_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23069..24109
DNA (1041bp) protein (347aa)
type VI secretion protein ImpA n=1 Tax=Variovorax paradoxus RepID=UPI000372184E rbh
type VI secretion-associated protein, ImpA family rbh
Type VI secretion-associated protein, ImpA family {ECO:0000313|EMBL:AGU47757.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Displaying items 1-30 of 192 in total

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