ggKbase home page

SCNpilot_cont_500_bf_scaffold_316

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_316_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92..685
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07M98_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ06936.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_500_bf_scaffold_316_2
unknown

Not on your lists

comp(655..1134)
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035C09A2
SCNpilot_cont_500_bf_scaffold_316_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1223..1909)
DNA (687bp) protein (229aa)
UPF0502 protein Varpa_4750 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYK8_VARPE rbh
hypothetical protein; K09915 hypothetical protein rbh
UPF0502 protein Varpa_4750 {ECO:0000256|HAMAP-Rule:MF_01584}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_316_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1993..3027)
DNA (1035bp) protein (345aa)
Isocitrate/isopropylmalate dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2JQ34_9BURK rbh
Isocitrate/isopropylmalate dehydrogenase {ECO:0000313|EMBL:EJL69935.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
isocitrate dehydrogenase [NAD] rbh
SCNpilot_cont_500_bf_scaffold_316_5
unknown

Not on your lists

comp(3102..3260)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_316_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3424..5520
DNA (2097bp) protein (699aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001329}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
methionyL-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10] rbh
methionyl-tRNA synthetase n=1 Tax=Variovorax paradoxus RepID=UPI0003699EB9 rbh
SCNpilot_cont_500_bf_scaffold_316_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5484..5750
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SWE2_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69932.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_316_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5758..7479)
DNA (1722bp) protein (574aa)
Methionyl-tRNA formyltransferase {ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|SAAS:SAAS00150580};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hydrogenase maturation protein n=1 Tax=Variovorax paradoxus RepID=UPI000363E7B5 rbh
[NiFe] hydrogenase maturation rbh
SCNpilot_cont_500_bf_scaffold_316_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7626..9305
DNA (1680bp) protein (560aa)
Sulfate permease-like transporter, MFS superfamily n=1 Tax=Variovorax sp. CF313 RepID=J2JQ29_9BURK rbh
Sulfate permease-like transporter, MFS superfamily {ECO:0000313|EMBL:EJL69930.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative sulfate permease rbh
SCNpilot_cont_500_bf_scaffold_316_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9322..9798)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D08BD
Uncharacterized protein {ECO:0000313|EMBL:EJL69929.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_316_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9868..10074
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYL5_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38918.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_316_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10153..10989
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SWD8_9BURK rbh
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
scpA; putative chromosome segregation/condensation protein ScpA rbh
SCNpilot_cont_500_bf_scaffold_316_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11011..12597
DNA (1587bp) protein (529aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nadB; L-aspartate oxidase NadB (EC:1.4.3.16) rbh
L-aspartate oxidase n=1 Tax=Variovorax paradoxus RepID=UPI00036E49F4 rbh
SCNpilot_cont_500_bf_scaffold_316_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12667..13560
DNA (894bp) protein (298aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11] rbh
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003738B09 rbh
SCNpilot_cont_500_bf_scaffold_316_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13580..14422
DNA (843bp) protein (281aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
panC; pantoate--beta-alanine ligase PanC (EC:6.3.2.1) rbh
Pantothenate synthetase n=1 Tax=Variovorax sp. CF313 RepID=J3CEB0_9BURK rbh
SCNpilot_cont_500_bf_scaffold_316_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14419..15057
DNA (639bp) protein (213aa)
7-carboxy-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_00917}; Short=CDG synthase {ECO:0000256|HAMAP-Rule:MF_00917};; EC=4.3.99.3 {ECO:0000256|HAMAP-Rule:MF_00917};; Queuosine biosynthesis protein QueE {ECO:0000256|HAMAP-Rule:MF_00917}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
7-cyano-7-deazaguanine reductase n=1 Tax=Variovorax paradoxus RepID=UPI0003646110 rbh
radical SAM protein rbh
SCNpilot_cont_500_bf_scaffold_316_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15098..15460
DNA (363bp) protein (121aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
6-pyruvoyl tetrahydrobiopterin synthase n=1 Tax=Variovorax paradoxus RepID=UPI000363826D
SCNpilot_cont_500_bf_scaffold_316_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15578..16714)
DNA (1137bp) protein (379aa)
Quinolinate synthase {ECO:0000256|SAAS:SAAS00096027}; EC=2.5.1.72 {ECO:0000256|SAAS:SAAS00096027};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
quinolinate synthetase; K03517 quinolinate synthase [EC:2.5.1.72] rbh
quinolinate synthetase n=1 Tax=Variovorax paradoxus RepID=UPI000365FED2 rbh
SCNpilot_cont_500_bf_scaffold_316_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16726..17604)
DNA (879bp) protein (293aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19); K00767 nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] rbh
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:ADU38926.1}; EC=2.4.2.19 {ECO:0000313|EMBL:ADU38926.1};; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
nicotinate-nucleotide pyrophosphorylase n=1 Tax=Variovorax paradoxus RepID=UPI00036B51FD rbh
SCNpilot_cont_500_bf_scaffold_316_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17631..18665)
DNA (1035bp) protein (345aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
NAD-dependent glyceroL-3-phosphate dehydrogenase domain-containing protein; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] rbh
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Variovorax sp. CF313 RepID=J3CEA7_9BURK rbh
SCNpilot_cont_500_bf_scaffold_316_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18690..19154)
DNA (465bp) protein (155aa)
Protein-export protein SecB n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYM5_VARPE
protein-export protein secb; K03071 preprotein translocase subunit SecB
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_500_bf_scaffold_316_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19282..19542)
DNA (261bp) protein (87aa)
Glutaredoxin, GrxC family n=1 Tax=Variovorax sp. CF313 RepID=J3CFE1_9BURK
Variovorax paradoxus strain MEDvA23 contig_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31558.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
glutaredoxin 3; K03676 glutaredoxin 3
SCNpilot_cont_500_bf_scaffold_316_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19563..19979)
DNA (417bp) protein (139aa)
Rhodanese-related sulfurtransferase n=1 Tax=Variovorax sp. CF313 RepID=J2KBK9_9BURK
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EJL70543.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rhodanese domain-containing protein
SCNpilot_cont_500_bf_scaffold_316_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19989..20795
DNA (807bp) protein (269aa)
phosphoglycerate mutase 1 family; K01834 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [EC:5.4.2.1] rbh
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamo
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYM8_VARPE rbh
SCNpilot_cont_500_bf_scaffold_316_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20896..22341
DNA (1446bp) protein (482aa)
C-terminal-processing peptidase (EC:3.4.21.102) rbh
C-terminal processing peptidase n=1 Tax=Variovorax sp. CF313 RepID=J3CFV8_9BURK rbh
C-terminal processing peptidase {ECO:0000313|EMBL:EJL70541.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_500_bf_scaffold_316_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22354..23112
DNA (759bp) protein (253aa)
molybdopterin biosynthesis protein MoeB n=1 Tax=Variovorax paradoxus RepID=UPI00037BA0C1 rbh
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis {ECO:0000313|EMBL:EJL70540.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
moeB; putative molybdopterin-synthase adenylyltransferase MoeB rbh
SCNpilot_cont_500_bf_scaffold_316_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23109..25130)
DNA (2022bp) protein (674aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CFD8_9BURK rbh
Variovorax paradoxus strain MEDvA23 contig_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31561.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
asma family protein; K07290 hypothetical protein rbh
SCNpilot_cont_500_bf_scaffold_316_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25368..25775
DNA (408bp) protein (136aa)
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain n=1 Tax=Variovorax sp. CF313 RepID=J2KBK5_9BURK
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL70538.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
response regulator receiver
SCNpilot_cont_500_bf_scaffold_316_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25816..26448)
DNA (633bp) protein (211aa)
Two component transcriptional regulator, LuxR family n=2 Tax=Variovorax RepID=E6UYN3_VARPE rbh
two component LuxR family transcriptional regulator rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL70537.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_500_bf_scaffold_316_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26556..27899
DNA (1344bp) protein (448aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYN4_VARPE rbh
multi-sensor signal transduction histidine kinase rbh
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:ADU38937.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Displaying items 1-30 of 124 in total

View Taxonomy