name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_500_bf_scaffold_366_1
unknown
|
Not on your lists |
1..279
|
This feature has no annotations |
|
SCNpilot_cont_500_bf_scaffold_366_2
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria
|
Not on your lists |
456..1601
|
Divergent AAA domain family id=2114640 bin=GWB2_Nitrospirae_rel_47_37 species=Clostridium botulinum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
transcriptional regulator with HTH domain
Tax=RBG_16_Chloroflexi_50_9_curated
|
|
SCNpilot_cont_500_bf_scaffold_366_3
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1737..2924
|
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IC80_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89905.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_4
unknown
|
Not on your lists |
comp(3420..4292)
|
This feature has no annotations |
|
SCNpilot_cont_500_bf_scaffold_366_5
Burkholderia multivorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4309..5604)
|
Site-specific recombinase, phage integrase family n=1 Tax=Burkholderia multivorans CF2 RepID=J4JKQ1_9BURK
rbh
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EJO58086.1}; TaxID=985078 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia multivorans CF2.;"
Phage integrase
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5845..8442
|
DNA mismatch repair protein MutS n=1 Tax=Variovorax sp. CF313 RepID=J2K315_9BURK
rbh
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
DNA mismatch repair protein muts; K03555 DNA mismatch repair protein MutS
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8471..9310
|
20S proteasome A and B subunits n=2 Tax=Variovorax paradoxus RepID=C5CTL9_VARPS
rbh
putative proteasome subunit
rbh
20S proteasome A and B subunits {ECO:0000313|EMBL:ACS20207.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_500_bf_scaffold_366_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9316..10116
|
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00036A51E2
rbh
alpha/beta hydrolase fold protein
rbh
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ADU38306.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_500_bf_scaffold_366_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10132..11604)
|
Putative amidase n=1 Tax=Variovorax paradoxus B4 RepID=T1XCY1_VARPD
rbh
putative amidase
rbh
Putative amidase {ECO:0000313|EMBL:AGU50792.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11710..12054)
|
Putative branched-chain amino acid transport protein, AzlD family n=1 Tax=Variovorax paradoxus B4 RepID=T1XE10_VARPD
putative branched-chain amino acid transport protein, AzlD family
Putative branched-chain amino acid transport protein, AzlD family {ECO:0000313|EMBL:AGU50793.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12054..12764)
|
Putative branched-chain amino acid permease, AzlC family n=1 Tax=Variovorax paradoxus B4 RepID=T1XEN6_VARPD
rbh
putative branched-chain amino acid permease, AzlC family
rbh
Putative branched-chain amino acid permease, AzlC family {ECO:0000313|EMBL:AGU50794.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12791..14428)
|
Putative glutathione ABC transporter, ATP-binding protein GsiA n=1 Tax=Variovorax paradoxus B4 RepID=T1XFA3_VARPD
rbh
gsiA1; putative glutathione ABC transporter, ATP-binding protein GsiA
rbh
Putative glutathione ABC transporter, ATP-binding protein GsiA {ECO:0000313|EMBL:AGU50795.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14441..15313)
|
Putative peptide ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XE64_VARPD
rbh
putative peptide ABC transporter, permease protein
rbh
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGU50796.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15327..16268)
|
Putative peptide ABC transporter, permease protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XCY4_VARPD
rbh
putative peptide ABC transporter, permease protein
rbh
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGU50797.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16273..17883)
|
Putative peptide ABC transporter, peptide-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XE14_VARPD
rbh
putative peptide ABC transporter, peptide-binding protein
rbh
Putative peptide ABC transporter, peptide-binding protein {ECO:0000313|EMBL:AGU50798.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17987..19456
|
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XEN8_VARPD
rbh
transcriptional regulator, GntR family
rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU50799.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19488..19868
|
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2K319_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL74545.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ycii-like protein
|
|
SCNpilot_cont_500_bf_scaffold_366_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19914..20540
|
acetyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI00035C9DE9
rbh
Acetyltransferase {ECO:0000313|EMBL:EJL74547.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
GCN5-like N-acetyltransferase
|
|
SCNpilot_cont_500_bf_scaffold_366_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20583..21287
|
LuxR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003649820
rbh
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain {ECO:0000313|EMBL:EJL74548.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
two component LuxR family transcriptional regulator
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21374..23113
|
histidine kinase n=1 Tax=Variovorax paradoxus RepID=UPI0003612135
rbh
Variovorax paradoxus strain MEDvA23 contig_53, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ27711.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
histidine kinase
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23125..23949)
|
Undecaprenyl-diphosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; EC=3.6.1.27 {ECO:0000256|HAMAP-Rule:MF_01006};; Bacitracin resistance protein {ECO:0000256|HAMAP-Rule:MF_01006}; Undecaprenyl pyrophosphate phosphatase {ECO:0000256|HAMAP-Rule:MF_01006}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27); K06153 undecaprenyl-diphosphatase [EC:3.6.1.27]
rbh
Undecaprenyl-diphosphatase n=1 Tax=Variovorax sp. CF313 RepID=J3CMN3_9BURK
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24106..24990
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037A775B
rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL74552.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24982..25623)
|
Asp/Glu/Hydantoin racemase n=1 Tax=Variovorax sp. CF313 RepID=J2KNA5_9BURK
rbh
Asp/Glu/Hydantoin racemase {ECO:0000313|EMBL:EJL74553.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Asp/Glu racemase
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25637..26551)
|
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Variovorax sp. CF313 RepID=J3CMD6_9BURK
rbh
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL74554.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
family 3 extracellular solute-binding protein; K10001 glutamate/aspartate transport system substrate-binding protein
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26605..27939)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035CEFAD
rbh
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:EJL74555.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative aminotransferase, class 3
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28084..28950
|
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CMN5_9BURK
rbh
Transcriptional regulator {ECO:0000313|EMBL:EJL74556.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
RpiR family transcriptional regulator
rbh
|
|
SCNpilot_cont_500_bf_scaffold_366_27
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28969..29664)
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036D860E
rbh
GntR family transcriptional regulator; K11475 GntR family transcriptional regulator, vanillate catabolism transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABQ70662.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
|
|
SCNpilot_cont_500_bf_scaffold_366_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30006..30371
|
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A1D18
SPW repeat protein {ECO:0000313|EMBL:EJL74557.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
|
|
SCNpilot_cont_500_bf_scaffold_366_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30432..31925)
|
Outer membrane efflux protein, NodT family n=1 Tax=Variovorax paradoxus B4 RepID=T1XFB9_VARPD
rbh
outer membrane efflux protein, NodT family
rbh
Outer membrane efflux protein, NodT family {ECO:0000313|EMBL:AGU50810.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_500_bf_scaffold_366_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31936..35226)
|
nodulation protein n=1 Tax=Variovorax paradoxus RepID=UPI000375C2F7
rbh
Acriflavin resistance protein {ECO:0000313|EMBL:ADU38320.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
acriflavin resistance protein; K07789 RND superfamily, multidrug transport protein MdtC
rbh
|